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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j79:0 (3.2) BS01 rna ? GO:0002181 ... Q8IEM3 24913268
    2 3j79:1 (3.2) BS01 rna ? GO:0003735 ... Q8IKM5 24913268
    3 3j79:2 (3.2) BS01 rna ? GO:0005840 ... Q8IHU0 24913268
    4 3j79:3 (3.2) BS01 rna ? GO:0000463 ... Q8IIB4 24913268
    5 3j79:3 (3.2) BS02 rna ? GO:0000463 ... Q8IIB4 24913268
    6 3j79:4 (3.2) BS01 rna ? GO:0002181 ... C6S3J6 24913268
    7 3j79:5 (3.2) BS01 rna ? GO:0000463 ... O97250 24913268
    8 3j79:5 (3.2) BS02 rna ? GO:0000463 ... O97250 24913268
    9 3j79:6 (3.2) BS01 rna ? GO:0003723 ... Q8IJK8 24913268
    10 3j79:7 (3.2) BS01 rna ? GO:0002181 ... Q8I463 24913268
    11 3j79:8 (3.2) BS01 rna ? GO:0003735 ... Q8I3B0 24913268
    12 3j79:9 (3.2) BS01 rna ? GO:0002181 ... Q8IHT9 24913268
    13 3j79:D (3.2) BS01 rna ? GO:0002181 ... Q8I3T9 24913268
    14 3j79:D (3.2) BS02 MG ? GO:0002181 ... Q8I3T9 24913268
    15 3j79:E (3.2) BS01 rna ? GO:0003723 ... Q8IJC6 24913268
    16 3j79:F (3.2) BS01 rna ? GO:0003723 ... Q8I431 24913268
    17 3j79:F (3.2) BS02 rna ? GO:0003723 ... Q8I431 24913268
    18 3j79:G (3.2) BS01 rna ? GO:0003723 ... Q8IBQ6 24913268
    19 3j79:G (3.2) BS02 rna ? GO:0003723 ... Q8IBQ6 24913268
    20 3j79:H (3.2) BS01 rna ? GO:0002181 ... Q8IE85 24913268
    21 3j79:I (3.2) BS01 rna N/A GO:0003735 ... N/A 24913268
    22 3j79:J (3.2) BS01 rna ? GO:0000470 ... Q8ILL2 24913268
    23 3j79:K (3.2) BS01 rna ? GO:0003729 ... Q8IJZ7 24913268
    24 3j79:L (3.2) BS01 rna ? GO:0003723 ... Q8IAX6 24913268
    25 3j79:M (3.2) BS01 rna ? GO:0003735 ... Q8IE09 24913268
    26 3j79:N (3.2) BS01 rna ? GO:0003723 ... Q8ILE8 24913268
    27 3j79:O (3.2) BS01 rna ? GO:0003735 ... C6KT23 24913268
    28 3j79:P (3.2) BS01 rna ? GO:0002181 ... C0H4A6 24913268
    29 3j79:P (3.2) BS02 rna ? GO:0002181 ... C0H4A6 24913268
    30 3j79:Q (3.2) BS01 rna ? GO:0000027 ... Q8ILV2 24913268
    31 3j79:Q (3.2) BS02 rna ? GO:0000027 ... Q8ILV2 24913268
    32 3j79:R (3.2) BS01 rna ? GO:0000027 ... Q8ILL3 24913268
    33 3j79:R (3.2) BS02 rna ? GO:0000027 ... Q8ILL3 24913268
    34 3j79:S (3.2) BS01 rna ? GO:0003723 ... C0H5G3 24913268
    35 3j79:T (3.2) BS01 rna ? GO:0003723 ... C6KSY6 24913268
    36 3j79:U (3.2) BS01 rna ? GO:0003735 ... Q8IDS6 24913268
    37 3j79:U (3.2) BS02 rna ? GO:0003735 ... Q8IDS6 24913268
    38 3j79:V (3.2) BS01 rna ? GO:0003735 ... Q8ILK3 24913268
    39 3j79:V (3.2) BS02 rna ? GO:0003735 ... Q8ILK3 24913268
    40 3j79:W (3.2) BS01 rna ? GO:0002181 ... Q8IDI5 24913268
    41 3j79:W (3.2) BS02 rna ? GO:0002181 ... Q8IDI5 24913268
    42 3j79:X (3.2) BS01 rna ? GO:0002181 ... Q8IB51 24913268
    43 3j79:Y (3.2) BS01 rna ? GO:0000027 ... Q8IE82 24913268
    44 3j79:Y (3.2) BS02 rna ? GO:0000027 ... Q8IE82 24913268
    45 3j79:Z (3.2) BS01 rna ? GO:0002181 ... O77364 24913268
    46 3j79:Z (3.2) BS02 rna ? GO:0002181 ... O77364 24913268
    47 3j79:a (3.2) BS01 rna ? GO:0003735 ... Q8IBY4 24913268
    48 3j79:a (3.2) BS02 ZN ? GO:0003735 ... Q8IBY4 24913268
    49 3j79:b (3.2) BS01 rna ? GO:0002181 ... Q8I713 24913268
    50 3j79:c (3.2) BS01 rna ? GO:0003723 ... C0H4L5 24913268
    51 3j79:c (3.2) BS02 rna ? GO:0003723 ... C0H4L5 24913268
    52 3j79:c (3.2) BS03 ZN ? GO:0003723 ... C0H4L5 24913268
    53 3j79:d (3.2) BS01 rna ? GO:0003735 ... Q8II62 24913268
    54 3j79:e (3.2) BS01 rna ? GO:0003735 ... C0H4H3 24913268
    55 3j79:e (3.2) BS02 rna ? GO:0003735 ... C0H4H3 24913268
    56 3j79:f (3.2) BS01 rna ? GO:0003735 ... Q8ID50 24913268
    57 3j79:f (3.2) BS02 ZN ? GO:0003735 ... Q8ID50 24913268
    58 3j79:h (3.2) BS01 rna ? GO:0003735 ... O96184 24913268
    59 3j79:h (3.2) BS02 ZN ? GO:0003735 ... O96184 24913268
    60 3j79:i (3.2) BS01 rna ? GO:0003735 ... O97231 24913268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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