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BioLiP Library
Download all results in tab-seperated text for 92 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j6y:10 (6.1) BS01 rna ? GO:0000054 ... Q08745 24927574
    2 3j6y:11 (6.1) BS01 rna ? GO:0000028 ... P0CX47 24927574
    3 3j6y:12 (6.1) BS01 rna ? GO:0000028 ... P48589 24927574
    4 3j6y:13 (6.1) BS01 rna ? GO:0000462 ... P05756 24927574
    5 3j6y:14 (6.1) BS01 rna ? GO:0000028 ... P06367 24927574
    6 3j6y:15 (6.1) BS01 rna ? GO:0000028 ... Q01855 24927574
    7 3j6y:16 (6.1) BS01 rna ? GO:0000462 ... P0CX51 24927574
    8 3j6y:17 (6.1) BS01 rna ? GO:0000028 ... P02407 24927574
    9 3j6y:18 (6.1) BS01 rna ? GO:0000054 ... P0CX55 24927574
    10 3j6y:19 (6.1) BS01 rna ? GO:0000028 ... P07280 24927574
    11 3j6y:20 (6.1) BS01 rna ? GO:0000462 ... P38701 24927574
    12 3j6y:22 (6.1) BS01 rna ? GO:0002181 ... P0C0W1 24927574
    13 3j6y:23 (6.1) BS01 rna ? GO:0000462 ... P0CX29 24927574
    14 3j6y:24 (6.1) BS01 rna ? GO:0000462 ... P0CX31 24927574
    15 3j6y:25 (6.1) BS01 rna ? GO:0002181 ... Q3E792 24927574
    16 3j6y:26 (6.1) BS01 rna ? GO:0000054 ... P39938 24927574
    17 3j6y:27 (6.1) BS01 rna ? GO:0000028 ... P35997 24927574
    18 3j6y:28 (6.1) BS01 rna ? GO:0000028 ... Q3E7X9 24927574
    19 3j6y:29 (6.1) BS01 rna ? GO:0002181 ... P41057 24927574
    20 3j6y:30 (6.1) BS01 rna ? GO:0002181 ... P0CX33 24927574
    21 3j6y:31 (6.1) BS01 rna ? GO:0000028 ... P05759 24927574
    22 3j6y:50 (6.1) BS01 rna ? GO:0000027 ... P41805 24927574
    23 3j6y:50 (6.1) BS02 rna ? GO:0000027 ... P41805 24927574
    24 3j6y:51 (6.1) BS01 rna ? GO:0000027 ... P0C0W9 24927574
    25 3j6y:51 (6.1) BS02 rna ? GO:0000027 ... P0C0W9 24927574
    26 3j6y:53 (6.1) BS01 rna ? GO:0002181 ... Q12690 24927574
    27 3j6y:54 (6.1) BS01 rna ? GO:0000027 ... P36105 24927574
    28 3j6y:55 (6.1) BS01 rna ? GO:0002181 ... P05748 24927574
    29 3j6y:55 (6.1) BS02 rna ? GO:0002181 ... P05748 24927574
    30 3j6y:56 (6.1) BS01 rna ? GO:0000470 ... P26784 24927574
    31 3j6y:57 (6.1) BS01 rna ? GO:0000448 ... P05740 24927574
    32 3j6y:57 (6.1) BS02 rna ? GO:0000448 ... P05740 24927574
    33 3j6y:58 (6.1) BS01 rna ? GO:0002181 ... P0CX49 24927574
    34 3j6y:59 (6.1) BS01 rna ? GO:0002181 ... P0CX82 24927574
    35 3j6y:59 (6.1) BS02 rna ? GO:0002181 ... P0CX82 24927574
    36 3j6y:60 (6.1) BS01 rna ? GO:0002181 ... P0CX23 24927574
    37 3j6y:60 (6.1) BS02 rna ? GO:0002181 ... P0CX23 24927574
    38 3j6y:61 (6.1) BS01 rna ? GO:0002181 ... Q02753 24927574
    39 3j6y:61 (6.1) BS02 rna ? GO:0002181 ... Q02753 24927574
    40 3j6y:62 (6.1) BS01 rna ? GO:0002181 ... P05749 24927574
    41 3j6y:63 (6.1) BS01 rna ? GO:0002181 ... P0CX41 24927574
    42 3j6y:63 (6.1) BS02 rna ? GO:0002181 ... P0CX41 24927574
    43 3j6y:64 (6.1) BS01 rna ? GO:0002181 ... P04449 24927574
    44 3j6y:65 (6.1) BS01 rna ? GO:0000027 ... P04456 24927574
    45 3j6y:65 (6.1) BS02 rna ? GO:0000027 ... P04456 24927574
    46 3j6y:66 (6.1) BS01 rna ? GO:0002181 ... P05743 24927574
    47 3j6y:66 (6.1) BS02 rna ? GO:0002181 ... P05743 24927574
    48 3j6y:67 (6.1) BS01 rna ? GO:0002181 ... P0C2H6 24927574
    49 3j6y:68 (6.1) BS01 rna ? GO:0002181 ... P02406 24927574
    50 3j6y:69 (6.1) BS01 rna ? GO:0002181 ... P05747 24927574
    51 3j6y:70 (6.1) BS01 rna ? GO:0002181 ... P14120 24927574
    52 3j6y:71 (6.1) BS01 rna ? GO:0002181 ... P0C2H8 24927574
    53 3j6y:72 (6.1) BS01 rna ? GO:0002181 ... P38061 24927574
    54 3j6y:73 (6.1) BS01 rna ? GO:0000027 ... P05744 24927574
    55 3j6y:74 (6.1) BS01 rna ? GO:0002181 ... P87262 24927574
    56 3j6y:75 (6.1) BS01 rna ? GO:0000463 ... P0CX84 24927574
    57 3j6y:75 (6.1) BS02 rna ? GO:0000463 ... P0CX84 24927574
    58 3j6y:76 (6.1) BS01 rna ? GO:0002181 ... P05745 24927574
    59 3j6y:77 (6.1) BS01 rna ? GO:0000448 ... P49166 24927574
    60 3j6y:77 (6.1) BS02 rna ? GO:0000448 ... P49166 24927574
    61 3j6y:78 (6.1) BS01 rna ? GO:0002181 ... P49167 24927574
    62 3j6y:79 (6.1) BS01 rna ? GO:0002181 ... P04650 24927574
    63 3j6y:79 (6.1) BS02 rna ? GO:0002181 ... P04650 24927574
    64 3j6y:80 (6.1) BS01 rna ? GO:0000027 ... P0CH08 24927574
    65 3j6y:82 (6.1) BS01 rna ? GO:0002181 ... P0CX27 24927574
    66 3j6y:83 (6.1) BS01 rna ? GO:0002181 ... P0CX25 24927574
    67 3j6y:L1 (6.1) BS01 rna ? GO:0000055 ... P0CX43 24927574
    68 3j6y:L2 (6.1) BS01 rna ? GO:0002181 ... P0CX45 24927574
    69 3j6y:L2 (6.1) BS02 rna ? GO:0002181 ... P0CX45 24927574
    70 3j6y:L3 (6.1) BS01 rna ? GO:0000027 ... P14126 24927574
    71 3j6y:L4 (6.1) BS01 rna ? GO:0002181 ... P10664 24927574
    72 3j6y:L4 (6.1) BS02 rna ? GO:0002181 ... P10664 24927574
    73 3j6y:L5 (6.1) BS01 rna ? GO:0000027 ... P26321 24927574
    74 3j6y:L5 (6.1) BS02 rna ? GO:0000027 ... P26321 24927574
    75 3j6y:L6 (6.1) BS01 rna ? GO:0000027 ... Q02326 24927574
    76 3j6y:L7 (6.1) BS01 rna ? GO:0000463 ... P05737 24927574
    77 3j6y:L7 (6.1) BS02 rna ? GO:0000463 ... P05737 24927574
    78 3j6y:L8 (6.1) BS01 rna ? GO:0000470 ... P17076 24927574
    79 3j6y:L8 (6.1) BS02 rna ? GO:0000470 ... P17076 24927574
    80 3j6y:L9 (6.1) BS01 rna ? GO:0002181 ... P05738 24927574
    81 3j6y:RA (6.1) BS01 rna ? GO:0001965 ... P38011 24927574
    82 3j6y:S0 (6.1) BS01 rna ? GO:0000028 ... P32905 24927574
    83 3j6y:S1 (6.1) BS01 rna ? GO:0000462 ... P33442 24927574
    84 3j6y:S2 (6.1) BS01 rna ? GO:0000054 ... P25443 24927574
    85 3j6y:S3 (6.1) BS01 rna ? GO:0000054 ... P05750 24927574
    86 3j6y:S4 (6.1) BS01 rna ? GO:0002181 ... P0CX35 24927574
    87 3j6y:S5 (6.1) BS01 rna ? GO:0000028 ... P26783 24927574
    88 3j6y:S6 (6.1) BS01 rna ? GO:0000462 ... P0CX37 24927574
    89 3j6y:S7 (6.1) BS01 rna ? GO:0002181 ... P26786 24927574
    90 3j6y:S8 (6.1) BS01 rna ? GO:0000462 ... P0CX39 24927574
    91 3j6y:S8 (6.1) BS02 rna ? GO:0000462 ... P0CX39 24927574
    92 3j6y:S9 (6.1) BS01 rna ? GO:0000462 ... O13516 24927574
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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