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BioLiP Library
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3i56:1 (2.9) BS01 rna ? GO:0003723 ... P32410 19738021
    2 3i56:2 (2.9) BS01 rna ? GO:0003735 ... P22452 19738021
    3 3i56:3 (2.9) BS01 rna ? GO:0000049 ... P32411 19738021
    4 3i56:A (2.9) BS01 rna ? GO:0002181 ... P20276 19738021
    5 3i56:A (2.9) BS02 MG ? GO:0002181 ... P20276 19738021
    6 3i56:A (2.9) BS03 MG ? GO:0002181 ... P20276 19738021
    7 3i56:B (2.9) BS01 rna ? GO:0003723 ... P20279 19738021
    8 3i56:C (2.9) BS01 rna ? GO:0003723 ... P12735 19738021
    9 3i56:D (2.9) BS01 rna ? GO:0000049 ... P14124 19738021
    10 3i56:D (2.9) BS02 rna ? GO:0000049 ... P14124 19738021
    11 3i56:E (2.9) BS01 rna ? GO:0002181 ... P14135 19738021
    12 3i56:F (2.9) BS01 rna ? GO:0001682 ... P12743 19738021
    13 3i56:H (2.9) BS01 rna ? GO:0000027 ... P60617 19738021
    14 3i56:I (2.9) BS01 rna ? GO:0003735 ... P14122 19738021
    15 3i56:J (2.9) BS01 rna ? GO:0003729 ... P29198 19738021
    16 3i56:K (2.9) BS01 rna ? GO:0003735 ... P22450 19738021
    17 3i56:L (2.9) BS01 rna ? GO:0003735 ... P12737 19738021
    18 3i56:M (2.9) BS01 rna ? GO:0002181 ... P60618 19738021
    19 3i56:N (2.9) BS01 rna ? GO:0000027 ... P14123 19738021
    20 3i56:N (2.9) BS02 rna ? GO:0000027 ... P14123 19738021
    21 3i56:O (2.9) BS01 rna ? GO:0003723 ... P12733 19738021
    22 3i56:P (2.9) BS01 rna ? GO:0003723 ... P14119 19738021
    23 3i56:Q (2.9) BS01 rna ? GO:0003735 ... P12734 19738021
    24 3i56:Q (2.9) BS02 rna ? GO:0003735 ... P12734 19738021
    25 3i56:R (2.9) BS01 rna ? GO:0002181 ... P10970 19738021
    26 3i56:S (2.9) BS01 rna ? GO:0000027 ... P12732 19738021
    27 3i56:T (2.9) BS01 rna ? GO:0002181 ... P10972 19738021
    28 3i56:T (2.9) BS02 MG ? GO:0002181 ... P10972 19738021
    29 3i56:U (2.9) BS01 rna ? GO:0003735 ... P14116 19738021
    30 3i56:V (2.9) BS01 rna ? GO:0003735 ... P10971 19738021
    31 3i56:W (2.9) BS01 rna ? GO:0000463 ... P14121 19738021
    32 3i56:W (2.9) BS02 rna ? GO:0000463 ... P14121 19738021
    33 3i56:X (2.9) BS01 rna ? GO:0002181 ... P18138 19738021
    34 3i56:Y (2.9) BS01 rna ? GO:0000166 ... P12736 19738021
    35 3i56:Y (2.9) BS02 MG ? GO:0000166 ... P12736 19738021
    36 3i56:Z (2.9) BS01 rna ? GO:0003735 ... P60619 19738021
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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