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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3hk9:A (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    2 3hk9:A (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    3 3hk9:A (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    4 3hk9:A (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    5 3hk9:B (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    6 3hk9:B (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    7 3hk9:B (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    8 3hk9:B (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    9 3hk9:C (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    10 3hk9:C (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    11 3hk9:C (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    12 3hk9:C (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    13 3hk9:D (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    14 3hk9:D (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    15 3hk9:D (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    16 3hk9:D (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    17 3hk9:E (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    18 3hk9:E (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    19 3hk9:E (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    20 3hk9:E (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    21 3hk9:F (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    22 3hk9:F (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    23 3hk9:F (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    24 3hk9:F (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    25 3hk9:G (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    26 3hk9:G (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    27 3hk9:G (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    28 3hk9:G (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    29 3hk9:H (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    30 3hk9:H (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    31 3hk9:H (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    32 3hk9:H (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    33 3hk9:I (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    34 3hk9:I (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    35 3hk9:I (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    36 3hk9:I (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    37 3hk9:J (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    38 3hk9:J (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    39 3hk9:J (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    40 3hk9:J (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    41 3hk9:K (2.1) BS01 REL ? GO:0046872 ... Q9KFI6 19678710
    42 3hk9:K (2.1) BS02 CO3 ? GO:0046872 ... Q9KFI6 19678710
    43 3hk9:K (2.1) BS03 ZN ? GO:0046872 ... Q9KFI6 19678710
    44 3hk9:K (2.1) BS04 CO3 ? GO:0046872 ... Q9KFI6 19678710
    45 3hk9:L (2.1) BS01 CO3 ? GO:0046872 ... Q9KFI6 19678710
    46 3hk9:L (2.1) BS02 REL ? GO:0046872 ... Q9KFI6 19678710
    47 3hk9:L (2.1) BS03 CO3 ? GO:0046872 ... Q9KFI6 19678710
    48 3hk9:L (2.1) BS04 ZN ? GO:0046872 ... Q9KFI6 19678710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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