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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3h3v:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... P04050 19535338
    2 3h3v:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... P04050 19535338
    3 3h3v:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 19535338
    4 3h3v:B (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 19535338
    5 3h3v:B (4.0) BS05 MG 2.7.7.6 GO:0000428 ... P04050 19535338
    6 3h3v:C (4.0) BS01 rna 2.7.7.6 GO:0000428 ... P08518 19535338
    7 3h3v:C (4.0) BS02 dna 2.7.7.6 GO:0000428 ... P08518 19535338
    8 3h3v:C (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 19535338
    9 3h3v:D (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 19535338
    10 3h3v:J (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 19535338
    11 3h3v:J (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 19535338
    12 3h3v:K (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 19535338
    13 3h3v:M (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 19535338
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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