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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3e3q:A (2.95) BS01 peptide ? N/A P01897 18941216
    2 3e3q:B (2.95) BS01 peptide ? N/A P01897 18941216
    3 3e3q:C (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    4 3e3q:D (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    5 3e3q:E (2.95) BS01 peptide N/A N/A N/A 18941216
    6 3e3q:F (2.95) BS01 peptide N/A N/A N/A 18941216
    7 3e3q:H (2.95) BS01 peptide ? N/A P01897 18941216
    8 3e3q:I (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    9 3e3q:J (2.95) BS01 peptide N/A N/A N/A 18941216
    10 3e3q:L (2.95) BS01 peptide ? N/A P01897 18941216
    11 3e3q:M (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    12 3e3q:N (2.95) BS01 peptide N/A N/A N/A 18941216
    13 3e3q:P (2.95) BS01 peptide ? N/A P01897 18941216
    14 3e3q:R (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    15 3e3q:S (2.95) BS01 peptide N/A N/A N/A 18941216
    16 3e3q:U (2.95) BS01 peptide ? N/A P01897 18941216
    17 3e3q:V (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    18 3e3q:W (2.95) BS01 peptide N/A N/A N/A 18941216
    19 3e3q:Y (2.95) BS01 peptide ? N/A P01897 18941216
    20 3e3q:Z (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    21 3e3q:a (2.95) BS01 peptide N/A N/A N/A 18941216
    22 3e3q:c (2.95) BS01 peptide ? N/A P01897 18941216
    23 3e3q:d (2.95) BS01 peptide ? N/A Q5R1C2 18941216
    24 3e3q:e (2.95) BS01 peptide N/A N/A N/A 18941216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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