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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3cpw:1 (2.7) BS01 rna ? GO:0003735 ... P22452 18494460
    2 3cpw:2 (2.7) BS01 rna ? GO:0000049 ... P32411 18494460
    3 3cpw:A (2.7) BS01 rna ? GO:0002181 ... P20276 18494460
    4 3cpw:A (2.7) BS02 MG ? GO:0002181 ... P20276 18494460
    5 3cpw:B (2.7) BS01 rna ? GO:0003723 ... P20279 18494460
    6 3cpw:C (2.7) BS01 rna ? GO:0003723 ... P12735 18494460
    7 3cpw:D (2.7) BS01 rna ? GO:0000049 ... P14124 18494460
    8 3cpw:D (2.7) BS02 rna ? GO:0000049 ... P14124 18494460
    9 3cpw:E (2.7) BS01 rna ? GO:0002181 ... P14135 18494460
    10 3cpw:F (2.7) BS01 rna ? GO:0001682 ... P12743 18494460
    11 3cpw:H (2.7) BS01 rna ? GO:0000027 ... P60617 18494460
    12 3cpw:I (2.7) BS01 rna ? GO:0003729 ... P29198 18494460
    13 3cpw:J (2.7) BS01 rna ? GO:0003735 ... P22450 18494460
    14 3cpw:K (2.7) BS01 rna ? GO:0003735 ... P12737 18494460
    15 3cpw:L (2.7) BS01 rna ? GO:0002181 ... P60618 18494460
    16 3cpw:M (2.7) BS01 rna ? GO:0000027 ... P14123 18494460
    17 3cpw:M (2.7) BS02 rna ? GO:0000027 ... P14123 18494460
    18 3cpw:N (2.7) BS01 rna ? GO:0003723 ... P12733 18494460
    19 3cpw:O (2.7) BS01 rna ? GO:0003723 ... P14119 18494460
    20 3cpw:P (2.7) BS01 rna ? GO:0003735 ... P12734 18494460
    21 3cpw:P (2.7) BS02 rna ? GO:0003735 ... P12734 18494460
    22 3cpw:Q (2.7) BS01 rna ? GO:0002181 ... P10970 18494460
    23 3cpw:R (2.7) BS01 rna ? GO:0000027 ... P12732 18494460
    24 3cpw:S (2.7) BS01 rna ? GO:0002181 ... P10972 18494460
    25 3cpw:S (2.7) BS02 MG ? GO:0002181 ... P10972 18494460
    26 3cpw:T (2.7) BS01 rna ? GO:0003735 ... P14116 18494460
    27 3cpw:U (2.7) BS01 rna ? GO:0003735 ... P10971 18494460
    28 3cpw:V (2.7) BS01 rna ? GO:0000463 ... P14121 18494460
    29 3cpw:V (2.7) BS02 rna ? GO:0000463 ... P14121 18494460
    30 3cpw:W (2.7) BS01 rna ? GO:0002181 ... P18138 18494460
    31 3cpw:X (2.7) BS01 rna ? GO:0000166 ... P12736 18494460
    32 3cpw:X (2.7) BS02 MG ? GO:0000166 ... P12736 18494460
    33 3cpw:Y (2.7) BS01 rna ? GO:0003735 ... P60619 18494460
    34 3cpw:Z (2.7) BS01 rna ? GO:0003723 ... P32410 18494460
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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