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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3cc7:1 (2.7) BS01 rna ? GO:0003723 ... P32410 18455733 PDBbind: Kd=1mM
    2 3cc7:2 (2.7) BS01 rna ? GO:0003735 ... P22452 18455733 PDBbind: Kd=1mM
    3 3cc7:3 (2.7) BS01 rna ? GO:0000049 ... P32411 18455733 PDBbind: Kd=1mM
    4 3cc7:A (2.7) BS01 rna ? GO:0002181 ... P20276 18455733 PDBbind: Kd=1mM
    5 3cc7:A (2.7) BS02 MG ? GO:0002181 ... P20276 18455733
    6 3cc7:A (2.7) BS03 MG ? GO:0002181 ... P20276 18455733
    7 3cc7:B (2.7) BS01 rna ? GO:0003723 ... P20279 18455733 PDBbind: Kd=1mM
    8 3cc7:C (2.7) BS01 rna ? GO:0003723 ... P12735 18455733 PDBbind: Kd=1mM
    9 3cc7:D (2.7) BS01 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=1mM
    10 3cc7:D (2.7) BS02 rna ? GO:0000049 ... P14124 18455733 PDBbind: Kd=1mM
    11 3cc7:E (2.7) BS01 rna ? GO:0002181 ... P14135 18455733 PDBbind: Kd=1mM
    12 3cc7:F (2.7) BS01 rna ? GO:0001682 ... P12743 18455733 PDBbind: Kd=1mM
    13 3cc7:H (2.7) BS01 rna ? GO:0000027 ... P60617 18455733 PDBbind: Kd=1mM
    14 3cc7:H (2.7) BS02 rna ? GO:0000027 ... P60617 18455733 PDBbind: Kd=1mM
    15 3cc7:I (2.7) BS01 rna ? GO:0003735 ... P14122 18455733 PDBbind: Kd=1mM
    16 3cc7:J (2.7) BS01 rna ? GO:0003729 ... P29198 18455733 PDBbind: Kd=1mM
    17 3cc7:K (2.7) BS01 rna ? GO:0003735 ... P22450 18455733 PDBbind: Kd=1mM
    18 3cc7:L (2.7) BS01 rna ? GO:0003735 ... P12737 18455733 PDBbind: Kd=1mM
    19 3cc7:M (2.7) BS01 rna ? GO:0002181 ... P60618 18455733 PDBbind: Kd=1mM
    20 3cc7:N (2.7) BS01 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=1mM
    21 3cc7:N (2.7) BS02 rna ? GO:0000027 ... P14123 18455733 PDBbind: Kd=1mM
    22 3cc7:O (2.7) BS01 rna ? GO:0003723 ... P12733 18455733 PDBbind: Kd=1mM
    23 3cc7:P (2.7) BS01 rna ? GO:0003723 ... P14119 18455733 PDBbind: Kd=1mM
    24 3cc7:Q (2.7) BS01 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=1mM
    25 3cc7:Q (2.7) BS02 rna ? GO:0003735 ... P12734 18455733 PDBbind: Kd=1mM
    26 3cc7:R (2.7) BS01 rna ? GO:0002181 ... P10970 18455733 PDBbind: Kd=1mM
    27 3cc7:S (2.7) BS01 rna ? GO:0000027 ... P12732 18455733 PDBbind: Kd=1mM
    28 3cc7:T (2.7) BS01 rna ? GO:0002181 ... P10972 18455733 PDBbind: Kd=1mM
    29 3cc7:T (2.7) BS02 MG ? GO:0002181 ... P10972 18455733
    30 3cc7:U (2.7) BS01 rna ? GO:0003735 ... P14116 18455733 PDBbind: Kd=1mM
    31 3cc7:V (2.7) BS01 rna ? GO:0003735 ... P10971 18455733 PDBbind: Kd=1mM
    32 3cc7:W (2.7) BS01 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=1mM
    33 3cc7:W (2.7) BS02 rna ? GO:0000463 ... P14121 18455733 PDBbind: Kd=1mM
    34 3cc7:X (2.7) BS01 rna ? GO:0002181 ... P18138 18455733 PDBbind: Kd=1mM
    35 3cc7:Y (2.7) BS01 rna ? GO:0000166 ... P12736 18455733 PDBbind: Kd=1mM
    36 3cc7:Y (2.7) BS02 MG ? GO:0000166 ... P12736 18455733
    37 3cc7:Z (2.7) BS01 rna ? GO:0003735 ... P60619 18455733 PDBbind: Kd=1mM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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