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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3a0b:A (3.7) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    2 3a0b:A (3.7) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    3 3a0b:A (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    4 3a0b:A (3.7) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    5 3a0b:A (3.7) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    6 3a0b:A (3.7) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    7 3a0b:A (3.7) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    8 3a0b:A (3.7) BS08 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    9 3a0b:A (3.7) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    10 3a0b:A (3.7) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    11 3a0b:B (3.7) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    12 3a0b:B (3.7) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    13 3a0b:B (3.7) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    14 3a0b:B (3.7) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    15 3a0b:B (3.7) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    16 3a0b:B (3.7) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    17 3a0b:B (3.7) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    18 3a0b:B (3.7) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    19 3a0b:B (3.7) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    20 3a0b:B (3.7) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    21 3a0b:B (3.7) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    22 3a0b:B (3.7) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    23 3a0b:B (3.7) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    24 3a0b:B (3.7) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    25 3a0b:B (3.7) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    26 3a0b:B (3.7) BS16 CLA ? GO:0009521 ... D0VWR1 19433803
    27 3a0b:C (3.7) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    28 3a0b:C (3.7) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    29 3a0b:C (3.7) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    30 3a0b:C (3.7) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    31 3a0b:C (3.7) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    32 3a0b:C (3.7) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    33 3a0b:C (3.7) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    34 3a0b:C (3.7) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    35 3a0b:C (3.7) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    36 3a0b:C (3.7) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    37 3a0b:C (3.7) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    38 3a0b:C (3.7) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    39 3a0b:C (3.7) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    40 3a0b:C (3.7) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    41 3a0b:D (3.7) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    42 3a0b:D (3.7) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    43 3a0b:D (3.7) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    44 3a0b:D (3.7) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    45 3a0b:D (3.7) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    46 3a0b:D (3.7) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    47 3a0b:D (3.7) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    48 3a0b:D (3.7) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    49 3a0b:E (3.7) BS01 peptide ? GO:0005506 ... P12238 19433803
    50 3a0b:E (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    51 3a0b:F (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    52 3a0b:H (3.7) BS01 CLA ? GO:0009523 ... P19052 19433803
    53 3a0b:H (3.7) BS02 CLA ? GO:0009523 ... P19052 19433803
    54 3a0b:H (3.7) BS03 CLA ? GO:0009523 ... P19052 19433803
    55 3a0b:I (3.7) BS01 CLA ? GO:0005737 ... P12240 19433803
    56 3a0b:I (3.7) BS02 CLA ? GO:0005737 ... P12240 19433803
    57 3a0b:J (3.7) BS01 peptide ? GO:0009523 ... Q7DGD4 19433803
    58 3a0b:K (3.7) BS01 peptide ? GO:0005737 ... P19054 19433803
    59 3a0b:K (3.7) BS02 CLA ? GO:0005737 ... P19054 19433803
    60 3a0b:K (3.7) BS03 CLA ? GO:0005737 ... P19054 19433803
    61 3a0b:K (3.7) BS04 CLA ? GO:0005737 ... P19054 19433803
    62 3a0b:L (3.7) BS01 CLA ? GO:0005737 ... P12241 19433803
    63 3a0b:M (3.7) BS01 CLA ? GO:0005737 ... P12312 19433803
    64 3a0b:V (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    65 3a0b:X (3.7) BS01 CLA ? GO:0009523 ... D0VWR4 19433803
    66 3a0b:Z (3.7) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    67 3a0b:Z (3.7) BS02 CLA ? GO:0009523 ... D0VWR5 19433803
    68 3a0b:a (3.7) BS01 OEC 1.10.3.9 GO:0005506 ... P51765 19433803
    69 3a0b:a (3.7) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 19433803
    70 3a0b:a (3.7) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    71 3a0b:a (3.7) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    72 3a0b:a (3.7) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    73 3a0b:a (3.7) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    74 3a0b:a (3.7) BS07 BR 1.10.3.9 GO:0005506 ... P51765 19433803
    75 3a0b:a (3.7) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    76 3a0b:a (3.7) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    77 3a0b:a (3.7) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    78 3a0b:a (3.7) BS11 PHO 1.10.3.9 GO:0005506 ... P51765 19433803
    79 3a0b:b (3.7) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    80 3a0b:b (3.7) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    81 3a0b:b (3.7) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    82 3a0b:b (3.7) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    83 3a0b:b (3.7) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    84 3a0b:b (3.7) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    85 3a0b:b (3.7) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    86 3a0b:b (3.7) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    87 3a0b:b (3.7) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    88 3a0b:b (3.7) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    89 3a0b:b (3.7) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    90 3a0b:b (3.7) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    91 3a0b:b (3.7) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    92 3a0b:b (3.7) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    93 3a0b:b (3.7) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    94 3a0b:c (3.7) BS01 OEC ? GO:0005737 ... D0VWR7 19433803
    95 3a0b:c (3.7) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    96 3a0b:c (3.7) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    97 3a0b:c (3.7) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    98 3a0b:c (3.7) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    99 3a0b:c (3.7) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    100 3a0b:c (3.7) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    101 3a0b:c (3.7) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    102 3a0b:c (3.7) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    103 3a0b:c (3.7) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    104 3a0b:c (3.7) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    105 3a0b:c (3.7) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    106 3a0b:c (3.7) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    107 3a0b:c (3.7) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    108 3a0b:d (3.7) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    109 3a0b:d (3.7) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    110 3a0b:d (3.7) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    111 3a0b:d (3.7) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    112 3a0b:d (3.7) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    113 3a0b:d (3.7) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    114 3a0b:d (3.7) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    115 3a0b:d (3.7) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    116 3a0b:e (3.7) BS01 peptide ? GO:0005506 ... P12238 19433803
    117 3a0b:e (3.7) BS02 HEM ? GO:0005506 ... P12238 19433803
    118 3a0b:f (3.7) BS01 HEM ? GO:0005506 ... P12239 19433803
    119 3a0b:h (3.7) BS01 CLA ? GO:0009523 ... P19052 19433803
    120 3a0b:h (3.7) BS02 CLA ? GO:0009523 ... P19052 19433803
    121 3a0b:h (3.7) BS03 CLA ? GO:0009523 ... P19052 19433803
    122 3a0b:i (3.7) BS01 CLA ? GO:0005737 ... P12240 19433803
    123 3a0b:i (3.7) BS02 CLA ? GO:0005737 ... P12240 19433803
    124 3a0b:k (3.7) BS01 peptide ? GO:0005737 ... P19054 19433803
    125 3a0b:k (3.7) BS02 CLA ? GO:0005737 ... P19054 19433803
    126 3a0b:l (3.7) BS01 CLA ? GO:0005737 ... P12241 19433803
    127 3a0b:m (3.7) BS01 CLA ? GO:0005737 ... P12312 19433803
    128 3a0b:v (3.7) BS01 HEM ? GO:0005506 ... P0A387 19433803
    129 3a0b:x (3.7) BS01 CLA ? GO:0009523 ... D0VWR4 19433803
    130 3a0b:z (3.7) BS01 peptide ? GO:0009523 ... D0VWR5 19433803
    131 3a0b:z (3.7) BS02 CLA ? GO:0009523 ... D0VWR5 19433803
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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