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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2yme:A (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    2 2yme:A (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    3 2yme:B (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    4 2yme:B (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    5 2yme:C (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    6 2yme:C (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    7 2yme:D (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    8 2yme:D (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    9 2yme:E (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    10 2yme:E (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    11 2yme:F (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    PDBbind: -logKd/Ki=7.66, Kd=22nM
    12 2yme:G (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    PDBbind: -logKd/Ki=7.66, Kd=22nM
    13 2yme:G (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    PDBbind: -logKd/Ki=7.66, Kd=22nM
    14 2yme:H (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    15 2yme:H (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    16 2yme:I (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    17 2yme:I (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    18 2yme:J (2.4) BS01 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    19 2yme:J (2.4) BS02 CWB ? GO:0004888 ... Q8WSF8 23196367 MOAD: Kd=343uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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