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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ykr:B (9.8) BS01 rna ? GO:0000028 ... P0A7V0 21788480
    2 2ykr:C (9.8) BS01 rna ? GO:0003676 ... P0A7V3 21788480
    3 2ykr:D (9.8) BS01 rna ? GO:0000028 ... P0A7V8 21788480
    4 2ykr:E (9.8) BS01 rna ? GO:0000028 ... P0A7W1 21788480
    5 2ykr:F (9.8) BS01 rna ? GO:0003735 ... P02358 21788480
    6 2ykr:G (9.8) BS01 rna ? GO:0003723 ... P02359 21788480
    7 2ykr:H (9.8) BS01 rna ? GO:0000028 ... P0A7W7 21788480
    8 2ykr:I (9.8) BS01 rna ? GO:0000049 ... P0A7X3 21788480
    9 2ykr:J (9.8) BS01 rna ? GO:0000049 ... P0A7R5 21788480
    10 2ykr:K (9.8) BS01 rna ? GO:0002181 ... P0A7R9 21788480
    11 2ykr:L (9.8) BS01 rna ? GO:0000049 ... P0A7S3 21788480
    12 2ykr:M (9.8) BS01 rna ? GO:0000049 ... P0A7S9 21788480
    13 2ykr:N (9.8) BS01 rna ? GO:0000028 ... P0AG59 21788480
    14 2ykr:O (9.8) BS01 rna ? GO:0000028 ... P0ADZ4 21788480
    15 2ykr:P (9.8) BS01 rna ? GO:0000028 ... P0A7T3 21788480
    16 2ykr:Q (9.8) BS01 rna ? GO:0000028 ... P0AG63 21788480
    17 2ykr:R (9.8) BS01 rna ? GO:0003735 ... P0A7T7 21788480
    18 2ykr:S (9.8) BS01 rna ? GO:0003723 ... P0A7U3 21788480
    19 2ykr:T (9.8) BS01 rna ? GO:0000028 ... P0A7U7 21788480
    20 2ykr:U (9.8) BS01 rna ? GO:0003735 ... P68679 21788480
    21 2ykr:W (9.8) BS01 rna 3.6.1.- GO:0000028 ... P39286 21788480
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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