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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2vxi:A (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    2 2vxi:A (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    3 2vxi:A (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    4 2vxi:A (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    5 2vxi:B (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    6 2vxi:B (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    7 2vxi:B (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    8 2vxi:B (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    9 2vxi:C (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    10 2vxi:C (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    11 2vxi:C (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    12 2vxi:C (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    13 2vxi:D (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    14 2vxi:D (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    15 2vxi:D (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    16 2vxi:D (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    17 2vxi:E (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    18 2vxi:E (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    19 2vxi:E (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    20 2vxi:E (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    21 2vxi:F (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    22 2vxi:F (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    23 2vxi:F (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    24 2vxi:F (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    25 2vxi:G (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    26 2vxi:G (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    27 2vxi:G (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    28 2vxi:G (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    29 2vxi:H (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    30 2vxi:H (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    31 2vxi:H (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    32 2vxi:H (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    33 2vxi:I (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    34 2vxi:I (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    35 2vxi:I (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    36 2vxi:I (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    37 2vxi:J (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    38 2vxi:J (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    39 2vxi:J (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    40 2vxi:J (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    41 2vxi:K (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    42 2vxi:K (1.91) BS02 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    43 2vxi:K (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    44 2vxi:K (1.91) BS04 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    45 2vxi:L (1.91) BS01 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    46 2vxi:L (1.91) BS02 HEM 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    47 2vxi:L (1.91) BS03 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    48 2vxi:L (1.91) BS04 ZN 1.16.3.1 GO:0004322 ... P0ABD3 18946693
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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