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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2uxb:B (3.1) BS01 rna ? GO:0003735 ... P80371 17416634
    2 2uxb:C (3.1) BS01 rna ? GO:0003676 ... P80372 17416634
    3 2uxb:D (3.1) BS01 rna ? GO:0003723 ... P80373 17416634
    4 2uxb:D (3.1) BS02 ZN ? GO:0003723 ... P80373 17416634
    5 2uxb:E (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 17416634
    6 2uxb:F (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 17416634
    7 2uxb:G (3.1) BS01 rna ? GO:0000028 ... P17291 17416634
    8 2uxb:H (3.1) BS01 rna ? GO:0003735 ... P0DOY9 17416634
    9 2uxb:I (3.1) BS01 rna ? GO:0000049 ... P80374 17416634
    10 2uxb:J (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 17416634
    11 2uxb:K (3.1) BS01 rna ? GO:0003735 ... P80376 17416634
    12 2uxb:L (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 17416634
    13 2uxb:M (3.1) BS01 rna ? GO:0000049 ... P80377 17416634
    14 2uxb:N (3.1) BS01 rna ? GO:0003735 ... P0DOY6 17416634
    15 2uxb:N (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 17416634
    16 2uxb:O (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 17416634
    17 2uxb:P (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 17416634
    18 2uxb:Q (3.1) BS01 rna ? GO:0003735 ... P0DOY7 17416634
    19 2uxb:R (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 17416634
    20 2uxb:S (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 17416634
    21 2uxb:T (3.1) BS01 rna ? GO:0003723 ... P80380 17416634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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