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BioLiP
Download all results in tab-seperated text for 108 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2jd8:0 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    2 2jd8:0 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    3 2jd8:0 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    4 2jd8:1 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    5 2jd8:1 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    6 2jd8:1 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    7 2jd8:2 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    8 2jd8:2 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    9 2jd8:2 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    10 2jd8:3 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    11 2jd8:3 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    12 2jd8:3 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    13 2jd8:4 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    14 2jd8:4 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    15 2jd8:4 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    16 2jd8:5 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    17 2jd8:5 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    18 2jd8:5 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    19 2jd8:6 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    20 2jd8:6 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    21 2jd8:6 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    22 2jd8:7 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    23 2jd8:7 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    24 2jd8:7 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    25 2jd8:8 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    26 2jd8:8 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    27 2jd8:8 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    28 2jd8:9 (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    29 2jd8:9 (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    30 2jd8:9 (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    31 2jd8:A (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    32 2jd8:A (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    33 2jd8:A (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    34 2jd8:B (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    35 2jd8:B (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    36 2jd8:B (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    37 2jd8:C (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    38 2jd8:C (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    39 2jd8:C (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    40 2jd8:D (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    41 2jd8:D (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    42 2jd8:D (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    43 2jd8:E (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    44 2jd8:E (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    45 2jd8:E (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    46 2jd8:F (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    47 2jd8:F (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    48 2jd8:F (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    49 2jd8:G (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    50 2jd8:G (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    51 2jd8:G (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    52 2jd8:H (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    53 2jd8:H (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    54 2jd8:H (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    55 2jd8:I (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    56 2jd8:I (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    57 2jd8:I (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    58 2jd8:J (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    59 2jd8:J (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    60 2jd8:J (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    61 2jd8:K (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    62 2jd8:K (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    63 2jd8:K (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    64 2jd8:L (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    65 2jd8:L (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    66 2jd8:L (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    67 2jd8:M (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    68 2jd8:M (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    69 2jd8:M (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    70 2jd8:N (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    71 2jd8:N (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    72 2jd8:N (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    73 2jd8:O (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    74 2jd8:O (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    75 2jd8:O (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    76 2jd8:P (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    77 2jd8:P (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    78 2jd8:P (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    79 2jd8:Q (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    80 2jd8:Q (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    81 2jd8:Q (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    82 2jd8:R (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    83 2jd8:R (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    84 2jd8:R (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    85 2jd8:S (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    86 2jd8:S (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    87 2jd8:S (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    88 2jd8:T (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    89 2jd8:T (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    90 2jd8:T (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    91 2jd8:U (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    92 2jd8:U (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    93 2jd8:U (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    94 2jd8:V (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    95 2jd8:V (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    96 2jd8:V (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    97 2jd8:W (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    98 2jd8:W (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    99 2jd8:W (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    100 2jd8:X (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    101 2jd8:X (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    102 2jd8:X (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    103 2jd8:Y (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    104 2jd8:Y (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    105 2jd8:Y (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    106 2jd8:Z (2.8) BS01 ZN ? GO:0004322 ... Q8U2T8 17541801
    107 2jd8:Z (2.8) BS02 ZN ? GO:0004322 ... Q8U2T8 17541801
    108 2jd8:Z (2.8) BS03 FE ? GO:0004322 ... Q8U2T8 17541801
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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