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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2j28:0 (9.5) BS01 rna ? GO:0000027 ... P0A7N4 17086193
    2 2j28:1 (9.5) BS01 rna ? GO:0000027 ... P0A7N9 17086193
    3 2j28:2 (9.5) BS01 rna ? GO:0002181 ... P0A7P5 17086193
    4 2j28:3 (9.5) BS01 rna ? GO:0002181 ... P0A7Q1 17086193
    5 2j28:4 (9.5) BS01 rna ? GO:0002181 ... P0A7Q6 17086193
    6 2j28:9 (9.5) BS01 peptide 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    7 2j28:9 (9.5) BS02 rna 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    8 2j28:9 (9.5) BS03 rna 3.6.5.4 GO:0003723 ... P0AGD7 17086193
    9 2j28:C (9.5) BS01 rna ? GO:0000027 ... P60422 17086193
    10 2j28:D (9.5) BS01 rna ? GO:0000027 ... P60438 17086193
    11 2j28:E (9.5) BS01 rna ? GO:0001070 ... P60723 17086193
    12 2j28:F (9.5) BS01 rna ? GO:0000027 ... P62399 17086193
    13 2j28:F (9.5) BS02 rna ? GO:0000027 ... P62399 17086193
    14 2j28:G (9.5) BS01 rna ? GO:0000027 ... P0AG55 17086193
    15 2j28:H (9.5) BS01 rna ? GO:0002181 ... P0A7R1 17086193
    16 2j28:I (9.5) BS01 rna ? GO:0000027 ... P0A7J7 17086193
    17 2j28:J (9.5) BS01 rna ? GO:0002181 ... P0AA10 17086193
    18 2j28:K (9.5) BS01 rna ? GO:0002181 ... P0ADY3 17086193
    19 2j28:L (9.5) BS01 rna ? GO:0002181 ... P02413 17086193
    20 2j28:M (9.5) BS01 rna ? GO:0000027 ... P0ADY7 17086193
    21 2j28:N (9.5) BS01 rna ? GO:0000027 ... P0AG44 17086193
    22 2j28:O (9.5) BS01 rna ? GO:0002181 ... P0C018 17086193
    23 2j28:O (9.5) BS02 rna ? GO:0002181 ... P0C018 17086193
    24 2j28:P (9.5) BS01 rna ? GO:0000027 ... P0A7K6 17086193
    25 2j28:Q (9.5) BS01 rna ? GO:0000027 ... P0A7L3 17086193
    26 2j28:R (9.5) BS01 rna ? GO:0002181 ... P0AG48 17086193
    27 2j28:S (9.5) BS01 rna ? GO:0002181 ... P61175 17086193
    28 2j28:T (9.5) BS01 rna ? GO:0000027 ... P0ADZ0 17086193
    29 2j28:U (9.5) BS01 rna ? GO:0000027 ... P60624 17086193
    30 2j28:V (9.5) BS01 rna ? GO:0000027 ... P68919 17086193
    31 2j28:V (9.5) BS02 rna ? GO:0000027 ... P68919 17086193
    32 2j28:W (9.5) BS01 rna ? GO:0000027 ... P0A7L8 17086193
    33 2j28:X (9.5) BS01 rna ? GO:0000027 ... P0A7M6 17086193
    34 2j28:Y (9.5) BS01 rna ? GO:0000027 ... P0AG51 17086193
    35 2j28:Y (9.5) BS02 rna ? GO:0000027 ... P0AG51 17086193
    36 2j28:Z (9.5) BS01 rna ? GO:0002181 ... P0A7M9 17086193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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