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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2h88:A (1.74) BS01 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 16935256
    2 2h88:A (1.74) BS02 TEO 1.3.5.1 GO:0005739 ... Q9YHT1 16935256
    3 2h88:B (1.74) BS01 FES 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    4 2h88:B (1.74) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    5 2h88:B (1.74) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    6 2h88:C (1.74) BS01 HEM 1.3.5.1 GO:0005739 ... D0VWW3 16935256
    7 2h88:D (1.74) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 16935256
    8 2h88:N (1.74) BS01 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 16935256
    9 2h88:N (1.74) BS02 TEO 1.3.5.1 GO:0005739 ... Q9YHT1 16935256
    10 2h88:O (1.74) BS01 FES 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    11 2h88:O (1.74) BS02 SF4 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    12 2h88:O (1.74) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    13 2h88:P (1.74) BS01 HEM 1.3.5.1 GO:0005739 ... D0VWW3 16935256
    14 2h88:Q (1.74) BS01 HEM 1.3.5.1 GO:0005740 ... Q5ZIS0 16935256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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