Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2fkw:A (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    2 2fkw:A (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    3 2fkw:A (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    4 2fkw:A (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    5 2fkw:B (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    6 2fkw:B (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    7 2fkw:B (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    8 2fkw:C (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    9 2fkw:C (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    10 2fkw:C (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    11 2fkw:C (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    12 2fkw:D (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    13 2fkw:D (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    14 2fkw:D (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    15 2fkw:E (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    16 2fkw:E (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    17 2fkw:E (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    18 2fkw:E (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    19 2fkw:E (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    20 2fkw:F (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    21 2fkw:F (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    22 2fkw:F (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    23 2fkw:G (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    24 2fkw:G (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    25 2fkw:G (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    26 2fkw:G (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    27 2fkw:G (2.45) BS05 BCL ? GO:0005886 ... P26789 16490208
    28 2fkw:H (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    29 2fkw:H (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    30 2fkw:H (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    31 2fkw:I (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    32 2fkw:I (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    33 2fkw:I (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    34 2fkw:J (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    35 2fkw:J (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    36 2fkw:J (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    37 2fkw:K (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    38 2fkw:K (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    39 2fkw:K (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    40 2fkw:K (2.45) BS04 BCL ? GO:0005886 ... P26789 16490208
    41 2fkw:L (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    42 2fkw:L (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    43 2fkw:L (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    44 2fkw:M (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    45 2fkw:M (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    46 2fkw:M (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    47 2fkw:N (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    48 2fkw:N (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    49 2fkw:N (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    50 2fkw:O (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    51 2fkw:O (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    52 2fkw:O (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    53 2fkw:P (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    54 2fkw:P (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    55 2fkw:P (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    56 2fkw:R (2.45) BS01 BCL ? GO:0005886 ... P26789 16490208
    57 2fkw:R (2.45) BS02 BCL ? GO:0005886 ... P26789 16490208
    58 2fkw:R (2.45) BS03 BCL ? GO:0005886 ... P26789 16490208
    59 2fkw:S (2.45) BS01 BCL ? GO:0005886 ... P26790 16490208
    60 2fkw:S (2.45) BS02 BCL ? GO:0005886 ... P26790 16490208
    61 2fkw:S (2.45) BS03 BCL ? GO:0005886 ... P26790 16490208
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218