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BioLiP
Download all results in tab-seperated text for 50 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2d3c:A (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    2 2d3c:A (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    3 2d3c:A (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    4 2d3c:A (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    5 2d3c:A (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    6 2d3c:B (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    7 2d3c:B (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    8 2d3c:B (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    9 2d3c:B (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    10 2d3c:B (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    11 2d3c:C (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    12 2d3c:C (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    13 2d3c:C (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    14 2d3c:C (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    15 2d3c:C (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    16 2d3c:D (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    17 2d3c:D (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    18 2d3c:D (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    19 2d3c:D (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    20 2d3c:D (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    21 2d3c:E (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    22 2d3c:E (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    23 2d3c:E (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    24 2d3c:E (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    25 2d3c:E (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    26 2d3c:F (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    27 2d3c:F (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    28 2d3c:F (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    29 2d3c:F (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    30 2d3c:F (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    31 2d3c:G (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    32 2d3c:G (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    33 2d3c:G (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    34 2d3c:G (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    35 2d3c:G (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    36 2d3c:H (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    37 2d3c:H (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    38 2d3c:H (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    39 2d3c:H (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    40 2d3c:H (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    41 2d3c:I (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    42 2d3c:I (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    43 2d3c:I (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    44 2d3c:I (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    45 2d3c:I (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    46 2d3c:J (3.81) BS01 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    47 2d3c:J (3.81) BS02 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    48 2d3c:J (3.81) BS03 MN 6.3.1.2 GO:0003824 ... P38561 16829528
    49 2d3c:J (3.81) BS04 P3P 6.3.1.2 GO:0003824 ... P38561 16829528
    50 2d3c:J (3.81) BS05 ADP 6.3.1.2 GO:0003824 ... P38561 16829528
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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