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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1yj9:1 (2.8) BS01 rna ? GO:0003723 ... P32410 15851032
    2 1yj9:2 (2.8) BS01 rna ? GO:0003735 ... P22452 15851032
    3 1yj9:3 (2.8) BS01 rna ? GO:0000049 ... P32411 15851032
    4 1yj9:3 (2.8) BS02 MG ? GO:0000049 ... P32411 15851032
    5 1yj9:A (2.8) BS01 rna ? GO:0002181 ... P20276 15851032
    6 1yj9:B (2.8) BS01 rna ? GO:0003723 ... P20279 15851032
    7 1yj9:C (2.8) BS01 rna ? GO:0003723 ... P12735 15851032
    8 1yj9:D (2.8) BS01 rna ? GO:0000049 ... P14124 15851032
    9 1yj9:D (2.8) BS02 rna ? GO:0000049 ... P14124 15851032
    10 1yj9:E (2.8) BS01 rna ? GO:0002181 ... P14135 15851032
    11 1yj9:F (2.8) BS01 rna ? GO:0001682 ... P12743 15851032
    12 1yj9:H (2.8) BS01 rna ? GO:0000027 ... P60617 15851032
    13 1yj9:I (2.8) BS01 rna ? GO:0003735 ... P14122 15851032
    14 1yj9:J (2.8) BS01 rna ? GO:0003729 ... P29198 15851032
    15 1yj9:K (2.8) BS01 rna ? GO:0003735 ... P22450 15851032
    16 1yj9:L (2.8) BS01 rna ? GO:0003735 ... P12737 15851032
    17 1yj9:M (2.8) BS01 rna ? GO:0002181 ... P60618 15851032
    18 1yj9:N (2.8) BS01 rna ? GO:0000027 ... P14123 15851032
    19 1yj9:N (2.8) BS02 rna ? GO:0000027 ... P14123 15851032
    20 1yj9:O (2.8) BS01 rna ? GO:0003723 ... P12733 15851032
    21 1yj9:P (2.8) BS01 rna ? GO:0003723 ... P14119 15851032
    22 1yj9:Q (2.8) BS01 rna ? GO:0003735 ... P12734 15851032
    23 1yj9:Q (2.8) BS02 rna ? GO:0003735 ... P12734 15851032
    24 1yj9:R (2.8) BS01 rna ? GO:0002181 ... P10970 15851032
    25 1yj9:S (2.8) BS01 rna ? GO:0000027 ... P12732 15851032
    26 1yj9:T (2.8) BS01 rna ? GO:0002181 ... P10972 15851032
    27 1yj9:T (2.8) BS02 MG ? GO:0002181 ... P10972 15851032
    28 1yj9:U (2.8) BS01 rna ? GO:0003735 ... P14116 15851032
    29 1yj9:V (2.8) BS01 rna ? GO:0003735 ... P10971 15851032
    30 1yj9:W (2.8) BS01 rna ? GO:0000463 ... P14121 15851032
    31 1yj9:W (2.8) BS02 rna ? GO:0000463 ... P14121 15851032
    32 1yj9:X (2.8) BS01 rna ? GO:0002181 ... P18138 15851032
    33 1yj9:Y (2.8) BS01 rna ? GO:0000166 ... P12736 15851032
    34 1yj9:Y (2.8) BS02 MG ? GO:0000166 ... P12736 15851032
    35 1yj9:Z (2.8) BS01 rna ? GO:0003735 ... P60619 15851032
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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