Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vql:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    2 1vql:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    3 1vql:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    4 1vql:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    5 1vql:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    6 1vql:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    7 1vql:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    8 1vql:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    9 1vql:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    10 1vql:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    11 1vql:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    12 1vql:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    13 1vql:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    14 1vql:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    15 1vql:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    16 1vql:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    17 1vql:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    18 1vql:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    19 1vql:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    20 1vql:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    21 1vql:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    22 1vql:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    23 1vql:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    24 1vql:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    25 1vql:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    26 1vql:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    27 1vql:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    28 1vql:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    29 1vql:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    30 1vql:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    31 1vql:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    32 1vql:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    33 1vql:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    34 1vql:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    35 1vql:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    36 1vql:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218