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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vq5:1 (2.6) BS01 rna ? GO:0003723 ... P32410 16285925
    2 1vq5:2 (2.6) BS01 rna ? GO:0003735 ... P22452 16285925
    3 1vq5:3 (2.6) BS01 rna ? GO:0000049 ... P32411 16285925
    4 1vq5:3 (2.6) BS02 MG ? GO:0000049 ... P32411 16285925
    5 1vq5:A (2.6) BS01 rna ? GO:0002181 ... P20276 16285925
    6 1vq5:A (2.6) BS02 MG ? GO:0002181 ... P20276 16285925
    7 1vq5:B (2.6) BS01 rna ? GO:0003723 ... P20279 16285925
    8 1vq5:C (2.6) BS01 rna ? GO:0003723 ... P12735 16285925
    9 1vq5:D (2.6) BS01 rna ? GO:0000049 ... P14124 16285925
    10 1vq5:D (2.6) BS02 rna ? GO:0000049 ... P14124 16285925
    11 1vq5:E (2.6) BS01 rna ? GO:0002181 ... P14135 16285925
    12 1vq5:F (2.6) BS01 rna ? GO:0001682 ... P12743 16285925
    13 1vq5:H (2.6) BS01 rna ? GO:0000027 ... P60617 16285925
    14 1vq5:I (2.6) BS01 rna ? GO:0003735 ... P14122 16285925
    15 1vq5:J (2.6) BS01 rna ? GO:0003729 ... P29198 16285925
    16 1vq5:K (2.6) BS01 rna ? GO:0003735 ... P22450 16285925
    17 1vq5:L (2.6) BS01 rna ? GO:0003735 ... P12737 16285925
    18 1vq5:M (2.6) BS01 rna ? GO:0002181 ... P60618 16285925
    19 1vq5:N (2.6) BS01 rna ? GO:0000027 ... P14123 16285925
    20 1vq5:N (2.6) BS02 rna ? GO:0000027 ... P14123 16285925
    21 1vq5:O (2.6) BS01 rna ? GO:0003723 ... P12733 16285925
    22 1vq5:P (2.6) BS01 rna ? GO:0003723 ... P14119 16285925
    23 1vq5:Q (2.6) BS01 rna ? GO:0003735 ... P12734 16285925
    24 1vq5:Q (2.6) BS02 rna ? GO:0003735 ... P12734 16285925
    25 1vq5:R (2.6) BS01 rna ? GO:0002181 ... P10970 16285925
    26 1vq5:S (2.6) BS01 rna ? GO:0000027 ... P12732 16285925
    27 1vq5:T (2.6) BS01 rna ? GO:0002181 ... P10972 16285925
    28 1vq5:T (2.6) BS02 MG ? GO:0002181 ... P10972 16285925
    29 1vq5:U (2.6) BS01 rna ? GO:0003735 ... P14116 16285925
    30 1vq5:V (2.6) BS01 rna ? GO:0003735 ... P10971 16285925
    31 1vq5:W (2.6) BS01 rna ? GO:0000463 ... P14121 16285925
    32 1vq5:W (2.6) BS02 rna ? GO:0000463 ... P14121 16285925
    33 1vq5:X (2.6) BS01 rna ? GO:0002181 ... P18138 16285925
    34 1vq5:Y (2.6) BS01 rna ? GO:0000166 ... P12736 16285925
    35 1vq5:Y (2.6) BS02 MG ? GO:0000166 ... P12736 16285925
    36 1vq5:Z (2.6) BS01 rna ? GO:0003735 ... P60619 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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