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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1rxs:A (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    2 1rxs:B (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    3 1rxs:B (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    4 1rxs:B (2.8) BS03 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    5 1rxs:C (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    6 1rxs:C (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    7 1rxs:C (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    8 1rxs:D (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    9 1rxs:D (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    10 1rxs:E (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    11 1rxs:E (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    12 1rxs:F (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    13 1rxs:F (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    14 1rxs:G (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    15 1rxs:G (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    16 1rxs:H (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    17 1rxs:H (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    18 1rxs:H (2.8) BS03 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    19 1rxs:I (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    20 1rxs:I (2.8) BS02 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    21 1rxs:I (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    22 1rxs:J (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    23 1rxs:J (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    24 1rxs:K (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    25 1rxs:K (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    26 1rxs:K (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    27 1rxs:L (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    28 1rxs:M (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    29 1rxs:M (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    30 1rxs:N (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    31 1rxs:N (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    32 1rxs:O (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    33 1rxs:O (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    34 1rxs:O (2.8) BS03 K 2.4.2.3 GO:0003824 ... P12758 15003451
    35 1rxs:P (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    36 1rxs:P (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    37 1rxs:Q (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    38 1rxs:Q (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    39 1rxs:R (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    40 1rxs:R (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    41 1rxs:a (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    42 1rxs:a (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    43 1rxs:b (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    44 1rxs:b (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    45 1rxs:c (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    46 1rxs:c (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    47 1rxs:d (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48 1rxs:d (2.8) BS02 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    49 1rxs:e (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    50 1rxs:e (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    51 1rxs:h (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    52 1rxs:h (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    53 1rxs:i (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    54 1rxs:i (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    55 1rxs:j (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    56 1rxs:j (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    57 1rxs:k (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    58 1rxs:k (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    59 1rxs:l (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    60 1rxs:l (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    61 1rxs:m (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    62 1rxs:o (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    63 1rxs:o (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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