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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1q5c:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    2 1q5c:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    3 1q5c:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    4 1q5c:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    5 1q5c:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    6 1q5c:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    7 1q5c:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    8 1q5c:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    9 1q5c:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    10 1q5c:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    11 1q5c:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12 1q5c:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    13 1q5c:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    14 1q5c:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    15 1q5c:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    16 1q5c:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    17 1q5c:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    18 1q5c:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    19 1q5c:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    20 1q5c:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    21 1q5c:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    22 1q5c:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    23 1q5c:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    24 1q5c:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    25 1q5c:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    26 1q5c:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27 1q5c:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    28 1q5c:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    29 1q5c:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    30 1q5c:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    31 1q5c:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    32 1q5c:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    33 1q5c:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    34 1q5c:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    35 1q5c:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    36 1q5c:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    37 1q5c:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    38 1q5c:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    39 1q5c:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    40 1q5c:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    41 1q5c:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    42 1q5c:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    43 1q5c:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    44 1q5c:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    45 1q5c:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    46 1q5c:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    47 1q5c:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    48 1q5c:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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