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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pp9:A (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P31800 16024040
    2 1pp9:A (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P31800 16024040
    3 1pp9:B (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    4 1pp9:C (2.1) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    5 1pp9:C (2.1) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    6 1pp9:C (2.1) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    7 1pp9:C (2.1) BS04 UQ 1.10.2.2 GO:0005739 ... P00157 16024040
    8 1pp9:D (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    9 1pp9:E (2.1) BS01 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    10 1pp9:E (2.1) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    11 1pp9:F (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    12 1pp9:G (2.1) BS01 AZI 1.10.2.2 GO:0005739 ... P13271 16024040
    13 1pp9:O (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    14 1pp9:P (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00157 16024040
    15 1pp9:P (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P00157 16024040
    16 1pp9:P (2.1) BS03 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    17 1pp9:P (2.1) BS04 HEM 1.10.2.2 GO:0005739 ... P00157 16024040
    18 1pp9:P (2.1) BS05 SMA 1.10.2.2 GO:0005739 ... P00157 16024040
    19 1pp9:P (2.1) BS06 UQ 1.10.2.2 GO:0005739 ... P00157 16024040
    20 1pp9:Q (2.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 16024040
    21 1pp9:R (2.1) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 16024040
    22 1pp9:R (2.1) BS02 FES 7.1.1.8 GO:0008121 ... P13272 16024040
    23 1pp9:S (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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