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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nkw:3 (3.1) BS01 rna ? GO:0003735 ... Q9RSW6 11733066
    2 1nkw:A (3.1) BS01 rna ? GO:0002181 ... Q9RXJ9 11733066
    3 1nkw:B (3.1) BS01 rna ? GO:0003735 ... Q9RXK2 11733066
    4 1nkw:C (3.1) BS01 rna ? GO:0003735 ... Q9RXK1 11733066
    5 1nkw:D (3.1) BS01 rna ? GO:0000049 ... Q9RXJ0 11733066
    6 1nkw:I (3.1) BS01 rna ? GO:0003735 ... Q9RXJ2 11733066
    7 1nkw:J (3.1) BS01 rna ? GO:0003735 ... Q9RSK9 11733066
    8 1nkw:K (3.1) BS01 rna ? GO:0000049 ... Q9RXJ5 11733066
    9 1nkw:L (3.1) BS01 rna ? GO:0003735 ... Q9RSJ5 11733066
    10 1nkw:O (3.1) BS01 rna ? GO:0000027 ... Q9RSW7 11733066
    11 1nkw:Q (3.1) BS01 rna ? GO:0003735 ... Q9RXJ7 11733066
    12 1nkw:X (3.1) BS01 rna ? GO:0003735 ... Q9RSL0 11733066
    13 1nkw:Y (3.1) BS01 rna ? GO:0000049 ... Q9RW44 11733066
    14 1nkw:Z (3.1) BS01 rna ? GO:0003735 ... P49228 11733066
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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