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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1nf4:A (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    2 1nf4:A (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    3 1nf4:A (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    4 1nf4:B (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    5 1nf4:B (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    6 1nf4:B (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    7 1nf4:C (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    8 1nf4:C (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    9 1nf4:C (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10 1nf4:D (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    11 1nf4:D (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    12 1nf4:D (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    13 1nf4:E (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    14 1nf4:E (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    15 1nf4:E (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    16 1nf4:F (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    17 1nf4:F (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    18 1nf4:F (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    19 1nf4:G (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    20 1nf4:G (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    21 1nf4:G (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    22 1nf4:H (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    23 1nf4:H (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    24 1nf4:H (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    25 1nf4:I (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    26 1nf4:I (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    27 1nf4:I (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    28 1nf4:J (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    29 1nf4:J (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    30 1nf4:J (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    31 1nf4:K (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    32 1nf4:K (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    33 1nf4:K (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    34 1nf4:L (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    35 1nf4:L (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    36 1nf4:L (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    37 1nf4:M (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    38 1nf4:M (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    39 1nf4:M (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    40 1nf4:N (2.05) BS01 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    41 1nf4:N (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    42 1nf4:N (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    43 1nf4:O (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    44 1nf4:O (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    45 1nf4:O (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    46 1nf4:P (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    47 1nf4:P (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    48 1nf4:P (2.05) BS03 FEC 1.16.3.1 GO:0003674 ... Q93PP9 12627224

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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