Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n8r:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12860128
    2 1n8r:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12860128
    3 1n8r:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12860128
    4 1n8r:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12860128
    5 1n8r:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12860128
    6 1n8r:C (3.0) BS01 rna ? GO:0002181 ... P20276 12860128
    7 1n8r:D (3.0) BS01 rna ? GO:0003723 ... P20279 12860128
    8 1n8r:E (3.0) BS01 rna ? GO:0003723 ... P12735 12860128
    9 1n8r:F (3.0) BS01 rna ? GO:0000049 ... P14124 12860128
    10 1n8r:F (3.0) BS02 rna ? GO:0000049 ... P14124 12860128
    11 1n8r:G (3.0) BS01 rna ? GO:0002181 ... P14135 12860128
    12 1n8r:H (3.0) BS01 rna ? GO:0001682 ... P12743 12860128
    13 1n8r:J (3.0) BS01 rna ? GO:0000027 ... P60617 12860128
    14 1n8r:K (3.0) BS01 rna ? GO:0003729 ... P29198 12860128
    15 1n8r:L (3.0) BS01 rna ? GO:0003735 ... P22450 12860128
    16 1n8r:M (3.0) BS01 rna ? GO:0003735 ... P12737 12860128
    17 1n8r:N (3.0) BS01 rna ? GO:0002181 ... P60618 12860128
    18 1n8r:O (3.0) BS01 rna ? GO:0000027 ... P14123 12860128
    19 1n8r:O (3.0) BS02 rna ? GO:0000027 ... P14123 12860128
    20 1n8r:P (3.0) BS01 rna ? GO:0003723 ... P12733 12860128
    21 1n8r:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12860128
    22 1n8r:R (3.0) BS01 rna ? GO:0003735 ... P12734 12860128
    23 1n8r:R (3.0) BS02 rna ? GO:0003735 ... P12734 12860128
    24 1n8r:S (3.0) BS01 rna ? GO:0002181 ... P10970 12860128
    25 1n8r:T (3.0) BS01 rna ? GO:0000027 ... P12732 12860128
    26 1n8r:U (3.0) BS01 rna ? GO:0002181 ... P10972 12860128
    27 1n8r:U (3.0) BS02 MG ? GO:0002181 ... P10972 12860128
    28 1n8r:V (3.0) BS01 rna ? GO:0003735 ... P14116 12860128
    29 1n8r:W (3.0) BS01 rna ? GO:0003735 ... P10971 12860128
    30 1n8r:X (3.0) BS01 rna ? GO:0000463 ... P14121 12860128
    31 1n8r:X (3.0) BS02 rna ? GO:0000463 ... P14121 12860128
    32 1n8r:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12860128
    33 1n8r:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12860128
    34 1n8r:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12860128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218