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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m34:A (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    2 1m34:A (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    3 1m34:B (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    4 1m34:B (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    5 1m34:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    6 1m34:C (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    7 1m34:C (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    8 1m34:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    9 1m34:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    10 1m34:D (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    11 1m34:E (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    12 1m34:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    13 1m34:E (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    14 1m34:E (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    15 1m34:F (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    16 1m34:F (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17 1m34:F (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    18 1m34:F (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    19 1m34:F (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    20 1m34:G (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    21 1m34:G (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    22 1m34:G (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    23 1m34:G (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    24 1m34:H (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25 1m34:H (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    26 1m34:H (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    27 1m34:H (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    28 1m34:I (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    29 1m34:I (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    30 1m34:J (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    31 1m34:J (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    32 1m34:J (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    33 1m34:K (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    34 1m34:K (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    35 1m34:L (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    36 1m34:L (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    37 1m34:L (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    38 1m34:M (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    39 1m34:M (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    40 1m34:M (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    41 1m34:M (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    42 1m34:N (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    43 1m34:N (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    44 1m34:N (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    45 1m34:N (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    46 1m34:O (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    47 1m34:O (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    48 1m34:O (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    49 1m34:O (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    50 1m34:P (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    51 1m34:P (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    52 1m34:P (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    53 1m34:P (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    54 1m34:P (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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