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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lgr:A (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    2 1lgr:A (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    3 1lgr:A (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    4 1lgr:B (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    5 1lgr:B (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    6 1lgr:B (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    7 1lgr:C (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    8 1lgr:C (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    9 1lgr:C (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    10 1lgr:D (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    11 1lgr:D (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    12 1lgr:D (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    13 1lgr:E (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    14 1lgr:E (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    15 1lgr:E (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    16 1lgr:F (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    17 1lgr:F (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    18 1lgr:F (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    19 1lgr:G (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    20 1lgr:G (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    21 1lgr:G (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    22 1lgr:H (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    23 1lgr:H (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    24 1lgr:H (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    25 1lgr:I (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    26 1lgr:I (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    27 1lgr:I (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    28 1lgr:J (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    29 1lgr:J (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    30 1lgr:J (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    31 1lgr:K (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    32 1lgr:K (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    33 1lgr:K (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    34 1lgr:L (2.79) BS01 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    35 1lgr:L (2.79) BS02 MN 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    36 1lgr:L (2.79) BS03 AMP 6.3.1.2 GO:0003824 ... P0A1P6 7727369
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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