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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1l9j:C (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    2 1l9j:D (3.25) BS01 HEM ? GO:0009055 ... P0C0X8 12051924
    3 1l9j:L (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    4 1l9j:L (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    5 1l9j:L (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    6 1l9j:L (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    7 1l9j:L (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    8 1l9j:L (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    9 1l9j:M (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    10 1l9j:M (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    11 1l9j:M (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    12 1l9j:M (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    13 1l9j:M (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    14 1l9j:M (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    15 1l9j:M (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    16 1l9j:R (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    17 1l9j:R (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    18 1l9j:R (3.25) BS03 BPH ? GO:0009772 ... P0C0Y8 12051924
    19 1l9j:R (3.25) BS04 FE2 ? GO:0009772 ... P0C0Y8 12051924
    20 1l9j:R (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    21 1l9j:R (3.25) BS06 BPH ? GO:0009772 ... P0C0Y8 12051924
    22 1l9j:S (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    23 1l9j:S (3.25) BS02 BPH ? GO:0009772 ... P0C0Y9 12051924
    24 1l9j:S (3.25) BS03 FE2 ? GO:0009772 ... P0C0Y9 12051924
    25 1l9j:S (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    26 1l9j:S (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    27 1l9j:S (3.25) BS06 BPH ? GO:0009772 ... P0C0Y9 12051924
    28 1l9j:S (3.25) BS07 U10 ? GO:0009772 ... P0C0Y9 12051924
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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