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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    2 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    3 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    4 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    5 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    6 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    7 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    8 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    9 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    10 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    11 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    12 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    13 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    14 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    15 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    16 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    17 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    18 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    19 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    20 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    21 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    22 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    23 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    24 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    25 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    26 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    27 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    28 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    29 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    30 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    31 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    32 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    33 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    34 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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