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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kog:A (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    2 1kog:A (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    3 1kog:A (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    4 1kog:A (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    5 1kog:B (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    6 1kog:B (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    7 1kog:B (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    8 1kog:B (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    9 1kog:C (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    10 1kog:C (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    11 1kog:C (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    12 1kog:C (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    13 1kog:D (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    14 1kog:D (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    15 1kog:D (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    16 1kog:D (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    17 1kog:E (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    18 1kog:E (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    19 1kog:E (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    20 1kog:E (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    21 1kog:F (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    22 1kog:F (3.5) BS02 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    23 1kog:F (3.5) BS03 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    24 1kog:F (3.5) BS04 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    25 1kog:G (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    26 1kog:G (3.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    27 1kog:G (3.5) BS03 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    28 1kog:H (3.5) BS01 rna 6.1.1.3 GO:0000166 ... P0A8M3 11953757 PDBbind: Kd=0.01uM
    29 1kog:H (3.5) BS02 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    30 1kog:H (3.5) BS03 TSB 6.1.1.3 GO:0000166 ... P0A8M3 11953757
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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