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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1kc8:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    2 1kc8:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    3 1kc8:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    4 1kc8:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    5 1kc8:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    6 1kc8:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    7 1kc8:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    8 1kc8:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    9 1kc8:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    10 1kc8:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    11 1kc8:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    12 1kc8:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    13 1kc8:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    14 1kc8:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    15 1kc8:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    16 1kc8:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    17 1kc8:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    18 1kc8:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    19 1kc8:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    20 1kc8:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    21 1kc8:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    22 1kc8:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    23 1kc8:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    24 1kc8:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    25 1kc8:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    26 1kc8:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    27 1kc8:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    28 1kc8:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    29 1kc8:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    30 1kc8:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    31 1kc8:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    32 1kc8:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    33 1kc8:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    34 1kc8:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    35 1kc8:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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