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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    2 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    3 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    4 1k9m:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    5 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    6 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    7 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    8 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    9 1k9m:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    10 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    11 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    12 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    13 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    14 1k9m:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    15 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    16 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    17 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    18 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    19 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    20 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    21 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    22 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    23 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    24 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    25 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    26 1k9m:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    27 1k9m:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    28 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    29 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    30 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    31 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    32 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    33 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    34 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    35 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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