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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ir2:A (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    2 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    3 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    4 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    5 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    6 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    7 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    8 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    9 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    10 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    11 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    12 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    13 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    14 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    15 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    16 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    18 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    19 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    21 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    22 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    23 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    24 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    25 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    26 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    27 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    28 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    29 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    30 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    31 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    32 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    33 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    34 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    35 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    36 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    37 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    38 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    39 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    40 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    41 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    42 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    43 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    44 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    45 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    46 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    47 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    48 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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