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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i43:A (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    2 1i43:A (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    3 1i43:A (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    4 1i43:A (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    5 1i43:B (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    6 1i43:B (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    7 1i43:B (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    8 1i43:B (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    9 1i43:C (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    10 1i43:C (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    11 1i43:C (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    12 1i43:C (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531 PDBbind: -logKd/Ki=3.70, Ki=200uM
    13 1i43:D (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    14 1i43:D (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    15 1i43:D (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    16 1i43:D (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    17 1i43:E (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    18 1i43:E (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    19 1i43:E (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    20 1i43:E (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    21 1i43:F (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    22 1i43:F (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    23 1i43:F (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    24 1i43:F (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    25 1i43:G (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    26 1i43:G (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    27 1i43:G (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    28 1i43:G (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    29 1i43:H (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    30 1i43:H (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    31 1i43:H (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    32 1i43:H (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    33 1i43:I (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    34 1i43:I (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    35 1i43:I (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    36 1i43:I (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    37 1i43:J (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    38 1i43:J (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    39 1i43:J (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    40 1i43:J (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    41 1i43:K (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    42 1i43:K (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    43 1i43:K (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    44 1i43:K (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    45 1i43:L (3.1) BS01 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    46 1i43:L (3.1) BS02 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    47 1i43:L (3.1) BS03 PLP 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    48 1i43:L (3.1) BS04 PMC 4.2.99.9 GO:0003962 ... Q9ZPL5 11518531
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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