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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1htq:A (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    2 1htq:A (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    3 1htq:B (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    4 1htq:B (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    5 1htq:C (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    6 1htq:C (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    7 1htq:D (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    8 1htq:D (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    9 1htq:E (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    10 1htq:E (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    11 1htq:F (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    12 1htq:F (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    13 1htq:G (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    14 1htq:G (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    15 1htq:H (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    16 1htq:H (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    17 1htq:I (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    18 1htq:I (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    19 1htq:J (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    20 1htq:J (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    21 1htq:K (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    22 1htq:K (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    23 1htq:L (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    24 1htq:L (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    25 1htq:M (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    26 1htq:M (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    27 1htq:N (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    28 1htq:N (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    29 1htq:O (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    30 1htq:O (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    31 1htq:P (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    32 1htq:P (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    33 1htq:Q (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    34 1htq:Q (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    35 1htq:R (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    36 1htq:R (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    37 1htq:S (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    38 1htq:S (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    39 1htq:T (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    40 1htq:T (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    41 1htq:U (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    42 1htq:U (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    43 1htq:V (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    44 1htq:V (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    45 1htq:W (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    46 1htq:W (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    47 1htq:X (2.4) BS01 MN 6.3.1.2 GO:0000287 ... P9WN39 12146952
    48 1htq:X (2.4) BS02 AMP 6.3.1.2 GO:0000287 ... P9WN39 12146952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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