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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gz4:A (2.2) BS01 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    2 1gz4:A (2.2) BS02 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    3 1gz4:A (2.2) BS03 TTN 1.1.1.38 GO:0004470 ... P23368 12121650
    4 1gz4:A (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    5 1gz4:A (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    6 1gz4:A (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    7 1gz4:B (2.2) BS01 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    8 1gz4:B (2.2) BS02 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    9 1gz4:B (2.2) BS03 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    10 1gz4:B (2.2) BS04 TTN 1.1.1.38 GO:0004470 ... P23368 12121650
    11 1gz4:B (2.2) BS05 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    12 1gz4:B (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    13 1gz4:C (2.2) BS01 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    14 1gz4:C (2.2) BS02 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    15 1gz4:C (2.2) BS03 TTN 1.1.1.38 GO:0004470 ... P23368 12121650
    16 1gz4:C (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    17 1gz4:C (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    18 1gz4:C (2.2) BS06 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    19 1gz4:D (2.2) BS01 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    20 1gz4:D (2.2) BS02 ATP 1.1.1.38 GO:0004470 ... P23368 12121650 MOAD: Ki=0.2mM
    21 1gz4:D (2.2) BS03 TTN 1.1.1.38 GO:0004470 ... P23368 12121650
    22 1gz4:D (2.2) BS04 MN 1.1.1.38 GO:0004470 ... P23368 12121650
    23 1gz4:D (2.2) BS05 FUM 1.1.1.38 GO:0004470 ... P23368 12121650
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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