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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    2 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    3 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    4 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    5 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    6 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    7 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    8 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    9 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    10 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    11 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    12 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    14 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    15 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    16 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    17 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    18 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    19 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    20 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    21 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    22 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    23 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    24 1gtn:L (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    25 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    26 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    27 1gtn:M (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    28 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    29 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    30 1gtn:N (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    31 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    32 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    33 1gtn:O (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    34 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    35 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    36 1gtn:P (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    37 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    38 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    39 1gtn:Q (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    40 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    41 1gtn:Q (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    42 1gtn:R (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    43 1gtn:R (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    44 1gtn:R (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    45 1gtn:S (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    46 1gtn:S (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    47 1gtn:S (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    48 1gtn:T (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    49 1gtn:T (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    50 1gtn:T (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    51 1gtn:U (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    52 1gtn:U (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    53 1gtn:U (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    54 1gtn:V (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    55 1gtn:V (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    56 1gtn:V (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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