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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fka:C (3.3) BS01 rna N/A N/A N/A 11007480
    2 1fka:D (3.3) BS01 rna ? GO:0003723 ... P80373 11007480
    3 1fka:E (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 11007480
    4 1fka:F (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 11007480
    5 1fka:G (3.3) BS01 rna ? GO:0000028 ... P17291 11007480
    6 1fka:H (3.3) BS01 rna ? GO:0003735 ... P0DOY9 11007480
    7 1fka:I (3.3) BS01 rna N/A N/A N/A 11007480
    8 1fka:J (3.3) BS01 rna N/A N/A N/A 11007480
    9 1fka:O (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 11007480
    10 1fka:Q (3.3) BS01 rna N/A N/A N/A 11007480
    11 1fka:S (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 11007480
    12 1fka:T (3.3) BS01 rna N/A N/A N/A 11007480
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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