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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ffk:1 (2.4) BS01 rna ? GO:0002181 ... P14135 10937989
    2 1ffk:A (2.4) BS01 rna ? GO:0002181 ... P20276 10937989
    3 1ffk:B (2.4) BS01 rna ? GO:0003723 ... P20279 10937989
    4 1ffk:C (2.4) BS01 rna ? GO:0003723 ... P12735 10937989
    5 1ffk:F (2.4) BS01 rna ? GO:0003735 ... P60617 10937989
    6 1ffk:G (2.4) BS01 rna ? GO:0003729 ... P29198 10937989
    7 1ffk:H (2.4) BS01 rna ? GO:0003735 ... P22450 10937989
    8 1ffk:I (2.4) BS01 rna ? GO:0002181 ... P60618 10937989
    9 1ffk:J (2.4) BS01 rna ? GO:0003735 ... P12737 10937989
    10 1ffk:K (2.4) BS01 rna ? GO:0000027 ... P14123 10937989
    11 1ffk:K (2.4) BS02 rna ? GO:0000027 ... P14123 10937989
    12 1ffk:L (2.4) BS01 rna ? GO:0003723 ... P12733 10937989
    13 1ffk:M (2.4) BS01 rna ? GO:0003723 ... P14119 10937989
    14 1ffk:N (2.4) BS01 rna ? GO:0003735 ... P12734 10937989
    15 1ffk:O (2.4) BS01 rna ? GO:0002181 ... P10970 10937989
    16 1ffk:S (2.4) BS01 rna ? GO:0003735 ... P10971 10937989
    17 1ffk:T (2.4) BS01 rna ? GO:0000463 ... P14121 10937989
    18 1ffk:V (2.4) BS01 rna ? GO:0003735 ... P12736 10937989
    19 1ffk:W (2.4) BS01 rna ? GO:0003735 ... P60619 10937989
    20 1ffk:X (2.4) BS01 rna ? GO:0003723 ... P32410 10937989
    21 1ffk:Z (2.4) BS01 rna ? GO:0000049 ... P32411 10937989
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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