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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ce8:A (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    2 1ce8:A (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    3 1ce8:A (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    4 1ce8:A (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    5 1ce8:A (2.1) BS05 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    6 1ce8:A (2.1) BS06 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    7 1ce8:A (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    8 1ce8:A (2.1) BS08 IMP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    9 1ce8:A (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    10 1ce8:B (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    11 1ce8:C (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    12 1ce8:C (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    13 1ce8:C (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    14 1ce8:C (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    15 1ce8:C (2.1) BS05 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    16 1ce8:C (2.1) BS06 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    17 1ce8:C (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    18 1ce8:C (2.1) BS08 IMP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    19 1ce8:C (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    20 1ce8:D (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    21 1ce8:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    22 1ce8:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    23 1ce8:E (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    24 1ce8:E (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    25 1ce8:E (2.1) BS05 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    26 1ce8:E (2.1) BS06 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    27 1ce8:E (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    28 1ce8:E (2.1) BS08 IMP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    29 1ce8:E (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    30 1ce8:F (2.1) BS01 ORN 6.3.5.5 GO:0004088 ... P0A6F1 10428826
    31 1ce8:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    32 1ce8:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    33 1ce8:G (2.1) BS03 MN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    34 1ce8:G (2.1) BS04 PO4 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    35 1ce8:G (2.1) BS05 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    36 1ce8:G (2.1) BS06 ADP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    37 1ce8:G (2.1) BS07 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    38 1ce8:G (2.1) BS08 IMP 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    39 1ce8:G (2.1) BS09 ORN 6.3.4.16
    6.3.5.5    		 GO:0000166 ... P00968 10428826
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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