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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c9s:A (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    2 1c9s:A (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    3 1c9s:A (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4 1c9s:B (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    5 1c9s:B (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    6 1c9s:C (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    7 1c9s:C (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    8 1c9s:D (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    9 1c9s:D (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    10 1c9s:E (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    11 1c9s:E (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    12 1c9s:F (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    13 1c9s:F (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    14 1c9s:G (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    15 1c9s:G (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    16 1c9s:H (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    17 1c9s:H (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    18 1c9s:I (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    19 1c9s:I (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    20 1c9s:J (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    21 1c9s:J (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    22 1c9s:K (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    23 1c9s:K (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    24 1c9s:L (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    25 1c9s:L (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    26 1c9s:L (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    27 1c9s:M (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    28 1c9s:M (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    29 1c9s:M (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    30 1c9s:N (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    31 1c9s:N (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    32 1c9s:N (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    33 1c9s:O (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    34 1c9s:O (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    35 1c9s:O (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    36 1c9s:P (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    37 1c9s:P (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    38 1c9s:P (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    39 1c9s:Q (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    40 1c9s:Q (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    41 1c9s:Q (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    42 1c9s:R (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    43 1c9s:R (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    44 1c9s:R (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    45 1c9s:S (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    46 1c9s:S (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    47 1c9s:S (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    48 1c9s:T (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    49 1c9s:T (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    50 1c9s:T (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    51 1c9s:U (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    52 1c9s:U (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    53 1c9s:U (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    54 1c9s:V (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    55 1c9s:V (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    56 1c9s:V (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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