Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9ax8:0 (2.6) BS01 rna N/A N/A C3SSG7 39222680
    2 9ax8:0 (2.6) BS02 rna N/A N/A C3SSG7 39222680
    3 9ax8:1 (2.6) BS01 rna N/A N/A A0A0E2KZD0 39222680
    4 9ax8:2 (2.6) BS01 rna N/A N/A N/A 39222680
    5 9ax8:3 (2.6) BS01 rna N/A N/A P0AG51 39222680
    6 9ax8:3 (2.6) BS02 rna N/A N/A P0AG51 39222680
    7 9ax8:4 (2.6) BS01 rna N/A N/A P60438 39222680
    8 9ax8:5 (2.6) BS01 rna N/A N/A A0A828UBL8 39222680
    9 9ax8:6 (2.6) BS01 rna N/A N/A N/A 39222680
    10 9ax8:7 (2.6) BS01 rna N/A N/A B7MGC4 39222680
    11 9ax8:8 (2.6) BS01 rna N/A N/A N/A 39222680
    12 9ax8:9 (2.6) BS01 rna N/A N/A P60422 39222680
    13 9ax8:E (2.6) BS01 rna N/A N/A A1AGK6 39222680
    14 9ax8:F (2.6) BS01 rna N/A N/A A0A4P8BX24 39222680
    15 9ax8:F (2.6) BS02 rna N/A N/A A0A4P8BX24 39222680
    16 9ax8:H (2.6) BS01 rna N/A N/A C3SR17 39222680
    17 9ax8:J (2.6) BS01 rna N/A N/A N/A 39222680
    18 9ax8:K (2.6) BS01 rna N/A N/A S1NW45 39222680
    19 9ax8:K (2.6) BS02 rna N/A N/A S1NW45 39222680
    20 9ax8:L (2.6) BS01 rna N/A N/A A0A037Y8L6 39222680
    21 9ax8:M (2.6) BS01 rna N/A N/A P0ADY7 39222680
    22 9ax8:M (2.6) BS02 rna N/A N/A P0ADY7 39222680
    23 9ax8:N (2.6) BS01 rna N/A N/A A0A2T1LEK9 39222680
    24 9ax8:O (2.6) BS01 rna N/A N/A N/A 39222680
    25 9ax8:O (2.6) BS02 rna N/A N/A N/A 39222680
    26 9ax8:P (2.6) BS01 rna N/A N/A S1PSA3 39222680
    27 9ax8:P (2.6) BS02 rna N/A N/A S1PSA3 39222680
    28 9ax8:Q (2.6) BS01 rna N/A N/A C3T7Q7 39222680
    29 9ax8:R (2.6) BS01 rna N/A N/A C3SSG2 39222680
    30 9ax8:S (2.6) BS01 rna N/A N/A P61175 39222680
    31 9ax8:T (2.6) BS01 rna N/A N/A C3SQV2 39222680
    32 9ax8:U (2.6) BS01 rna N/A N/A A0A7U9LWC1 39222680
    33 9ax8:V (2.6) BS01 rna N/A N/A N/A 39222680
    34 9ax8:Y (2.6) BS01 rna N/A N/A A0A0E2L017 39222680
    35 9ax8:b (2.6) BS01 rna N/A N/A N/A 39222680
    36 9ax8:c (2.6) BS01 rna N/A N/A P0A7V5 39222680
    37 9ax8:d (2.6) BS01 rna N/A N/A C3SR62 39222680
    38 9ax8:e (2.6) BS01 rna N/A N/A N/A 39222680
    39 9ax8:f (2.6) BS01 rna N/A N/A P02358 39222680
    40 9ax8:g (2.6) BS01 rna N/A N/A P02359 39222680
    41 9ax8:h (2.6) BS01 rna N/A N/A A0A828U358 39222680
    42 9ax8:i (2.6) BS01 rna N/A N/A N/A 39222680
    43 9ax8:j (2.6) BS01 rna N/A N/A A0A0H3EQD3 39222680
    44 9ax8:k (2.6) BS01 rna N/A N/A P0A7R9 39222680
    45 9ax8:l (2.6) BS01 rna N/A N/A C3SQR7 39222680
    46 9ax8:m (2.6) BS01 rna N/A N/A S1P5F8 39222680
    47 9ax8:n (2.6) BS01 rna N/A N/A A0A090BZT4 39222680
    48 9ax8:o (2.6) BS01 rna N/A N/A N/A 39222680
    49 9ax8:o (2.6) BS02 rna N/A N/A N/A 39222680
    50 9ax8:p (2.6) BS01 rna N/A N/A C3SYP2 39222680
    51 9ax8:q (2.6) BS01 rna N/A N/A N/A 39222680
    52 9ax8:r (2.6) BS01 rna N/A N/A P0A7T9 39222680
    53 9ax8:s (2.6) BS01 rna N/A N/A A0A7U9LGZ0 39222680
    54 9ax8:t (2.6) BS01 rna N/A N/A C3TRH7 39222680
    55 9ax8:u (2.6) BS01 rna N/A N/A A0A5C9AJ78 39222680
    56 9ax8:z (2.6) BS01 rna N/A N/A A0A376TVY0 39222680
    57 9ax8:z (2.6) BS02 rna N/A N/A A0A376TVY0 39222680
    58 9ax8:z (2.6) BS03 rna N/A N/A A0A376TVY0 39222680
    59 9ax8:z (2.6) BS04 MG N/A N/A A0A376TVY0 39222680
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218