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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8was:0 (6.13) BS01 ZN ? GO:0000082 ... P51948 38127763
    2 8was:2 (6.13) BS01 ZN ? GO:0000438 ... Q13888 38127763
    3 8was:2 (6.13) BS02 ZN ? GO:0000438 ... Q13888 38127763
    4 8was:2 (6.13) BS03 ZN ? GO:0000438 ... Q13888 38127763
    5 8was:3 (6.13) BS01 ZN ? GO:0000438 ... Q13889 38127763
    6 8was:3 (6.13) BS02 ZN ? GO:0000438 ... Q13889 38127763
    7 8was:6 (6.13) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    8 8was:6 (6.13) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    9 8was:7 (6.13) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    10 8was:P (6.13) BS01 dna ? GO:0000785 ... P20226 38127763
    11 8was:P (6.13) BS02 dna ? GO:0000785 ... P20226 38127763
    12 8was:Q (6.13) BS01 dna ? GO:0000979 ... P52655 38127763
    13 8was:R (6.13) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    14 8was:R (6.13) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    15 8was:R (6.13) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    16 8was:T (6.13) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    17 8was:U (6.13) BS01 ZN ? GO:0001113 ... P29083 38127763
    18 8was:o (6.13) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    19 8was:o (6.13) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    20 8was:o (6.13) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    21 8was:o (6.13) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    22 8was:o (6.13) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    23 8was:o (6.13) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    24 8was:o (6.13) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    25 8was:p (6.13) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    26 8was:p (6.13) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    27 8was:p (6.13) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    28 8was:p (6.13) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    29 8was:q (6.13) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    30 8was:s (6.13) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    31 8was:w (6.13) BS01 ZN ? GO:0000428 ... P60899 38127763
    32 8was:w (6.13) BS02 ZN ? GO:0000428 ... P60899 38127763
    33 8was:x (6.13) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    34 8was:z (6.13) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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