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BioLiP
Download all results in tab-seperated text for 262 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8uvr:2F (2.6) BS04 MG N/A N/A Q5SHN9 38165935
    202 8uvr:2G (2.6) BS01 rna N/A N/A Q5SHQ0 38165935
    203 8uvr:2G (2.6) BS02 rna N/A N/A Q5SHQ0 38165935
    204 8uvr:2G (2.6) BS03 rna N/A N/A Q5SHQ0 38165935
    205 8uvr:2H (2.6) BS01 rna N/A N/A P0DOY8 38165935
    206 8uvr:2I (2.6) BS01 rna N/A N/A Q5SLQ1 38165935
    207 8uvr:2N (2.6) BS01 rna N/A N/A P60488 38165935
    208 8uvr:2O (2.6) BS01 rna N/A N/A Q5SHP8 38165935
    209 8uvr:2O (2.6) BS02 rna N/A N/A Q5SHP8 38165935
    210 8uvr:2P (2.6) BS01 rna N/A N/A Q5SHQ7 38165935
    211 8uvr:2Q (2.6) BS01 rna N/A N/A P60489 38165935
    212 8uvr:2Q (2.6) BS02 rna N/A N/A P60489 38165935
    213 8uvr:2Q (2.6) BS03 rna N/A N/A P60489 38165935
    214 8uvr:2R (2.6) BS01 rna N/A N/A Q9Z9H5 38165935
    215 8uvr:2S (2.6) BS01 rna N/A N/A Q5SHQ4 38165935
    216 8uvr:2S (2.6) BS02 rna N/A N/A Q5SHQ4 38165935
    217 8uvr:2T (2.6) BS01 rna N/A N/A P60490 38165935
    218 8uvr:2T (2.6) BS02 rna N/A N/A P60490 38165935
    219 8uvr:2U (2.6) BS01 rna N/A N/A P60491 38165935
    220 8uvr:2U (2.6) BS02 MG N/A N/A P60491 38165935
    221 8uvr:2V (2.6) BS01 rna N/A N/A P60492 38165935
    222 8uvr:2V (2.6) BS02 MG N/A N/A P60492 38165935
    223 8uvr:2W (2.6) BS01 rna N/A N/A Q5SHP3 38165935
    224 8uvr:2W (2.6) BS02 MG N/A N/A Q5SHP3 38165935
    225 8uvr:2X (2.6) BS01 rna N/A N/A Q5SHP0 38165935
    226 8uvr:2X (2.6) BS02 MG N/A N/A Q5SHP0 38165935
    227 8uvr:2Y (2.6) BS01 rna N/A N/A Q5SHP9 38165935
    228 8uvr:2Y (2.6) BS02 ZN N/A N/A Q5SHP9 38165935
    229 8uvr:2Z (2.6) BS01 rna N/A N/A Q5SHZ1 38165935
    230 8uvr:2Z (2.6) BS02 rna N/A N/A Q5SHZ1 38165935
    231 8uvr:2Z (2.6) BS03 MG N/A N/A Q5SHZ1 38165935
    232 8uvr:2b (2.6) BS01 rna N/A N/A P80371 38165935
    233 8uvr:2c (2.6) BS01 rna N/A N/A P80372 38165935
    234 8uvr:2d (2.6) BS01 rna N/A N/A P80373 38165935
    235 8uvr:2d (2.6) BS02 MG N/A N/A P80373 38165935
    236 8uvr:2d (2.6) BS03 SF4 N/A N/A P80373 38165935
    237 8uvr:2e (2.6) BS01 rna N/A N/A Q5SHQ5 38165935
    238 8uvr:2f (2.6) BS01 rna N/A N/A Q5SLP8 38165935
    239 8uvr:2g (2.6) BS01 rna N/A N/A P17291 38165935
    240 8uvr:2g (2.6) BS02 rna N/A N/A P17291 38165935
    241 8uvr:2h (2.6) BS01 rna N/A N/A P0DOY9 38165935
    242 8uvr:2i (2.6) BS01 rna N/A N/A P80374 38165935
    243 8uvr:2i (2.6) BS02 rna N/A N/A P80374 38165935
    244 8uvr:2j (2.6) BS01 rna N/A N/A Q5SHN7 38165935
    245 8uvr:2k (2.6) BS01 rna N/A N/A P80376 38165935
    246 8uvr:2k (2.6) BS02 MG N/A N/A P80376 38165935
    247 8uvr:2l (2.6) BS01 rna N/A N/A Q5SHN3 38165935
    248 8uvr:2l (2.6) BS02 MG N/A N/A Q5SHN3 38165935
    249 8uvr:2l (2.6) BS03 MG N/A N/A Q5SHN3 38165935
    250 8uvr:2m (2.6) BS01 rna N/A N/A P80377 38165935
    251 8uvr:2n (2.6) BS01 rna N/A N/A P0DOY6 38165935
    252 8uvr:2n (2.6) BS02 ZN N/A N/A P0DOY6 38165935
    253 8uvr:2o (2.6) BS01 rna N/A N/A Q5SJ76 38165935
    254 8uvr:2o (2.6) BS02 rna N/A N/A Q5SJ76 38165935
    255 8uvr:2p (2.6) BS01 rna N/A N/A Q5SJH3 38165935
    256 8uvr:2q (2.6) BS01 rna N/A N/A P0DOY7 38165935
    257 8uvr:2q (2.6) BS02 MG N/A N/A P0DOY7 38165935
    258 8uvr:2q (2.6) BS03 MG N/A N/A P0DOY7 38165935
    259 8uvr:2r (2.6) BS01 rna N/A N/A Q5SLQ0 38165935
    260 8uvr:2s (2.6) BS01 rna N/A N/A Q5SHP2 38165935
    261 8uvr:2t (2.6) BS01 rna N/A N/A P80380 38165935
    262 8uvr:2t (2.6) BS02 MG N/A N/A P80380 38165935
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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