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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uu5:1 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGL9 38407413
    2 8uu5:2 (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    3 8uu5:2 (3.0) BS02 rna ? GO:0003735 ... A0A0U4VSJ1 38407413
    4 8uu5:3 (3.0) BS01 rna ? GO:0003735 ... A0A0U4MT39 38407413
    5 8uu5:4 (3.0) BS01 rna ? GO:0003735 ... A0A660JNN0 38407413
    6 8uu5:4 (3.0) BS02 ZN ? GO:0003735 ... A0A660JNN0 38407413
    7 8uu5:5 (3.0) BS01 rna ? GO:0003735 ... A0A660JRA4 38407413
    8 8uu5:5 (3.0) BS02 ZN ? GO:0003735 ... A0A660JRA4 38407413
    9 8uu5:6 (3.0) BS01 rna ? GO:0003735 ... A0A660JKZ6 38407413
    10 8uu5:7 (3.0) BS01 rna ? GO:0003735 ... A0A660JIB9 38407413
    11 8uu5:8 (3.0) BS01 rna ? GO:0003735 ... A0A0U5AM58 38407413
    12 8uu5:8 (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AM58 38407413
    13 8uu5:C (3.0) BS01 rna ? GO:0002181 ... A0A0U5A742 38407413
    14 8uu5:C (3.0) BS02 MG ? GO:0002181 ... A0A0U5A742 38407413
    15 8uu5:D (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADD0 38407413
    16 8uu5:E (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSH7 38407413
    17 8uu5:F (3.0) BS01 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    18 8uu5:F (3.0) BS02 rna ? GO:0000049 ... A0A0U5AWX6 38407413
    19 8uu5:G (3.0) BS01 rna ? GO:0002181 ... A0A0U5ALU0 38407413
    20 8uu5:L (3.0) BS01 rna ? GO:0003729 ... A0A0U5AGN0 38407413
    21 8uu5:M (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP82 38407413
    22 8uu5:M (3.0) BS02 rna ? GO:0003735 ... A0A0U5AP82 38407413
    23 8uu5:N (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6S7 38407413
    24 8uu5:O (3.0) BS01 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    25 8uu5:O (3.0) BS02 rna ? GO:0000049 ... A0A0U4VSU8 38407413
    26 8uu5:P (3.0) BS01 rna ? GO:0003735 ... A0A0U4VSW3 38407413
    27 8uu5:Q (3.0) BS01 rna ? GO:0003735 ... A0A0U5AR65 38407413
    28 8uu5:Q (3.0) BS02 rna ? GO:0003735 ... A0A0U5AR65 38407413
    29 8uu5:R (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    30 8uu5:R (3.0) BS02 rna ? GO:0003735 ... A0A6B0JQF2 38407413
    31 8uu5:S (3.0) BS01 rna ? GO:0000027 ... A0A660JH71 38407413
    32 8uu5:T (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD18 38407413
    33 8uu5:U (3.0) BS01 rna ? GO:0003735 ... A0A0U5ANW2 38407413
    34 8uu5:V (3.0) BS01 rna ? GO:0000027 ... A0A0U4MTC5 38407413
    35 8uu5:W (3.0) BS01 rna ? GO:0003723 ... A0A0U5AD05 38407413
    36 8uu5:Y (3.0) BS01 rna ? GO:0003735 ... A0A660JMC7 38407413
    37 8uu5:Z (3.0) BS01 rna ? GO:0003735 ... A0A660JJV9 38407413
    38 8uu5:b (3.0) BS01 rna N/A GO:0003735 ... N/A 38407413
    39 8uu5:c (3.0) BS01 rna ? GO:0003676 ... A0A0U4VSU9 38407413
    40 8uu5:d (3.0) BS01 rna N/A GO:0003723 ... N/A 38407413
    41 8uu5:e (3.0) BS01 rna ? GO:0003723 ... A0A0U4VSJ3 38407413
    42 8uu5:f (3.0) BS01 rna ? GO:0003735 ... A0A7X0WKH5 38407413
    43 8uu5:g (3.0) BS01 rna ? GO:0000028 ... A0A660JPE1 38407413
    44 8uu5:h (3.0) BS01 rna ? GO:0003735 ... A0A0U5A6U3 38407413
    45 8uu5:i (3.0) BS01 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    46 8uu5:i (3.0) BS02 rna ? GO:0003723 ... A0A0U5ADS9 38407413
    47 8uu5:j (3.0) BS01 rna ? GO:0000049 ... A0A0U5A730 38407413
    48 8uu5:k (3.0) BS01 rna ? GO:0003735 ... A0A0U5AP31 38407413
    49 8uu5:l (3.0) BS01 rna ? GO:0000049 ... A0A660JM56 38407413
    50 8uu5:m (3.0) BS01 rna ? GO:0000049 ... A0A0U5ARJ0 38407413
    51 8uu5:m (3.0) BS02 MG ? GO:0000049 ... A0A0U5ARJ0 38407413
    52 8uu5:n (3.0) BS01 rna ? GO:0003735 ... A0A0U5AGZ1 38407413
    53 8uu5:n (3.0) BS02 ZN ? GO:0003735 ... A0A0U5AGZ1 38407413
    54 8uu5:o (3.0) BS01 rna ? GO:0003735 ... A0A660JLK4 38407413
    55 8uu5:o (3.0) BS02 rna ? GO:0003735 ... A0A660JLK4 38407413
    56 8uu5:p (3.0) BS01 rna ? GO:0003735 ... A0A6B0JQE1 38407413
    57 8uu5:q (3.0) BS01 rna ? GO:0003735 ... A0A0U5ADR4 38407413
    58 8uu5:r (3.0) BS01 rna ? GO:0003735 ... A0A660JK14 38407413
    59 8uu5:s (3.0) BS01 rna ? GO:0000028 ... A0A0U4VSH5 38407413
    60 8uu5:t (3.0) BS01 rna ? GO:0003723 ... A0A660JML5 38407413
    61 8uu5:t (3.0) BS02 MG ? GO:0003723 ... A0A660JML5 38407413
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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