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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8uex:1B (3.9) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    2 8uex:1D (3.9) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    3 8uex:1E (3.9) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    4 8uex:1F (3.9) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    5 8uex:1F (3.9) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    6 8uex:1G (3.9) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    7 8uex:1G (3.9) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    8 8uex:1G (3.9) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    9 8uex:1I (3.9) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    10 8uex:1I (3.9) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    11 8uex:1O (3.9) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    12 8uex:1O (3.9) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    13 8uex:1P (3.9) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    14 8uex:1R (3.9) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    15 8uex:1T (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    16 8uex:1U (3.9) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    17 8uex:1W (3.9) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    18 8uex:1n (3.9) BS01 EHZ N/A N/A K7GSE5 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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