Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 267 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8ud8:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    202 8ud8:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    203 8ud8:2N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    204 8ud8:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    205 8ud8:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    206 8ud8:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    207 8ud8:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    208 8ud8:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    209 8ud8:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    210 8ud8:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    211 8ud8:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    212 8ud8:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 38359125
    213 8ud8:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    214 8ud8:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    215 8ud8:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    216 8ud8:2T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    217 8ud8:2T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    218 8ud8:2T (2.6) BS03 MG ? GO:0003735 ... P60490 38359125
    219 8ud8:2U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    220 8ud8:2U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    221 8ud8:2V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    222 8ud8:2V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    223 8ud8:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    224 8ud8:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    225 8ud8:2X (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    226 8ud8:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    227 8ud8:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    228 8ud8:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    229 8ud8:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    230 8ud8:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    231 8ud8:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 38359125
    232 8ud8:2b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    233 8ud8:2c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    234 8ud8:2d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    235 8ud8:2d (2.6) BS02 MG ? GO:0003723 ... P80373 38359125
    236 8ud8:2d (2.6) BS03 SF4 ? GO:0003723 ... P80373 38359125
    237 8ud8:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    238 8ud8:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    239 8ud8:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    240 8ud8:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    241 8ud8:2g (2.6) BS01 rna ? GO:0000028 ... P17291 38359125
    242 8ud8:2g (2.6) BS02 rna ? GO:0000028 ... P17291 38359125
    243 8ud8:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    244 8ud8:2i (2.6) BS01 rna ? GO:0000049 ... P80374 38359125
    245 8ud8:2i (2.6) BS02 rna ? GO:0000049 ... P80374 38359125
    246 8ud8:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    247 8ud8:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 38359125
    248 8ud8:2k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    249 8ud8:2k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    250 8ud8:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    251 8ud8:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    252 8ud8:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    253 8ud8:2m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    254 8ud8:2m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125
    255 8ud8:2m (2.6) BS03 rna ? GO:0000049 ... P80377 38359125
    256 8ud8:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    257 8ud8:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    258 8ud8:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    259 8ud8:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    260 8ud8:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    261 8ud8:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    262 8ud8:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    263 8ud8:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    264 8ud8:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    265 8ud8:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    266 8ud8:2t (2.6) BS01 rna ? GO:0003723 ... P80380 38359125
    267 8ud8:2t (2.6) BS02 MG ? GO:0003723 ... P80380 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218