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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8shg:A (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    2 8shg:A (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    3 8shg:B (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    4 8shg:B (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    5 8shg:D (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    6 8shg:D (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    7 8shg:E (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    8 8shg:E (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    9 8shg:G (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    10 8shg:G (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    11 8shg:H (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    12 8shg:H (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    13 8shg:Q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    14 8shg:Q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    15 8shg:Z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    16 8shg:Z (2.8) BS02 MG ? GO:0003723 ... P40227 37852256
    17 8shg:Z (2.8) BS03 AF3 ? GO:0003723 ... P40227 37852256
    18 8shg:a (2.8) BS01 ADP ? GO:0000242 ... P17987 37852256
    19 8shg:a (2.8) BS02 AF3 ? GO:0000242 ... P17987 37852256
    20 8shg:b (2.8) BS01 ADP ? GO:0002199 ... P78371 37852256
    21 8shg:b (2.8) BS02 AF3 ? GO:0002199 ... P78371 37852256
    22 8shg:d (2.8) BS01 ADP ? GO:0002199 ... P50991 37852256
    23 8shg:d (2.8) BS02 AF3 ? GO:0002199 ... P50991 37852256
    24 8shg:e (2.8) BS01 ADP ? GO:0003730 ... P48643 37852256
    25 8shg:e (2.8) BS02 AF3 ? GO:0003730 ... P48643 37852256
    26 8shg:g (2.8) BS01 ADP ? GO:0002199 ... P49368 37852256
    27 8shg:g (2.8) BS02 AF3 ? GO:0002199 ... P49368 37852256
    28 8shg:h (2.8) BS01 ADP ? GO:0005515 ... Q99832 37852256
    29 8shg:h (2.8) BS02 AF3 ? GO:0005515 ... Q99832 37852256
    30 8shg:q (2.8) BS01 ADP ? GO:0002199 ... P50990 37852256
    31 8shg:q (2.8) BS02 AF3 ? GO:0002199 ... P50990 37852256
    32 8shg:z (2.8) BS01 ADP ? GO:0003723 ... P40227 37852256
    33 8shg:z (2.8) BS02 AF3 ? GO:0003723 ... P40227 37852256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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